Jatropha Genome Database

Jcr4S20322.10
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jcr4S20322.10 /pseudo/partial
         (350 letters)

Database: JAT_unigene 
           122,497 sequences; 49,272,789 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

contig06911  length=6171  numreads=1352  gene=isogroup01820  sta...   609   e-174
contig02799  length=318  numreads=23  gene=isogroup00446  status...    86   2e-16
leaf_GE9D68U01EURI0                                                    84   1e-15
contig19808  length=291  numreads=9  gene=isogroup14717  status=...    62   4e-09

>contig06911  length=6171  numreads=1352  gene=isogroup01820
            status=isotig
          Length = 6171

 Score =  609 bits (307), Expect = e-174
 Identities = 307/307 (100%)
 Strand = Plus / Plus

                                                                        
Query: 1    aagatcctgaatttgagactttctacactaaaaatattctcttaaacgaaggtattcgtg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3600 aagatcctgaatttgagactttctacactaaaaatattctcttaaacgaaggtattcgtg 3659

                                                                        
Query: 61   cttggatggcggctcaagatcagcctcatgaaaaccttatattccctgaggaggttctac 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3660 cttggatggcggctcaagatcagcctcatgaaaaccttatattccctgaggaggttctac 3719

                                                                        
Query: 121  cacgtggaaacgctctttaatggaactttatctttagccggtcgtgaccaagaaactacc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3720 cacgtggaaacgctctttaatggaactttatctttagccggtcgtgaccaagaaactacc 3779

                                                                        
Query: 181  ggtttcgcttggtgggccgggaatgcccgacttatcaatttatccggtaaactactggga 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3780 ggtttcgcttggtgggccgggaatgcccgacttatcaatttatccggtaaactactggga 3839

                                                                        
Query: 241  gctcatgtagctcatgctggattaatcgtattctgggccggagcaatgaacctatttgaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3840 gctcatgtagctcatgctggattaatcgtattctgggccggagcaatgaacctatttgaa 3899

                   
Query: 301  gtggctc 307
            |||||||
Sbjct: 3900 gtggctc 3906


>contig02799  length=318  numreads=23  gene=isogroup00446
           status=isotig
          Length = 318

 Score = 85.7 bits (43), Expect = 2e-16
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                      
Query: 308 taatgaagcatctaacagccgagataggcataccgattggacc 350
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 taatgaagcatctaacagccgagataggcataccgattggacc 134


>leaf_GE9D68U01EURI0
          Length = 232

 Score = 83.8 bits (42), Expect = 1e-15
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                     
Query: 309 aatgaagcatctaacagccgagataggcataccgattggacc 350
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  aatgaagcatctaacagccgagataggcataccgattggacc 110


>contig19808  length=291  numreads=9  gene=isogroup14717
           status=isotig
          Length = 291

 Score = 61.9 bits (31), Expect = 4e-09
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 308 taatgaagcatctaacagccgagataggcataccgattggacc 350
           ||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 150 taatgaagcaatgaacagccgagataggcataccgattggacc 108