Jatropha Genome Database

Jcr4S15788.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S15788.10 /short
         (68 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008309001 assembled CDS                                        55   6e-09
GSVIVT01006739001 assembled CDS                                        46   3e-06

>GSVIVT01008309001 assembled CDS
          Length = 389

 Score = 55.1 bits (131), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 1  MGLLSNFCGCLEKLKFARXXXXXXXXXXXXXXXXXX---XXRTLQVATNFFSESNQLGHG 57
          MG LS  C CLE+    R                       R LQVATNFFSE N+LGHG
Sbjct: 1  MGFLSLLCSCLERRLKGRGGAGDDEADAASDGDSFDLFFDLRALQVATNFFSEFNELGHG 60

Query: 58 GFGPVYK 64
          GFGPVYK
Sbjct: 61 GFGPVYK 67


>GSVIVT01006739001 assembled CDS
          Length = 375

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/25 (76%), Positives = 23/25 (92%)

Query: 40 TLQVATNFFSESNQLGHGGFGPVYK 64
          T++VATN FS+SN+LG GGFGPVYK
Sbjct: 36 TIRVATNNFSDSNKLGQGGFGPVYK 60