Jatropha Genome Database

Jcr4S14121.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S14121.10 /short/partial
         (38 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00710.1 | Symbols: PSBH | photosystem II reaction center pro...    55   1e-08

>ATCG00710.1 | Symbols: PSBH | photosystem II reaction center
          protein H | chrC:74485-74706 FORWARD LENGTH=73
          Length = 73

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/31 (83%), Positives = 27/31 (87%)

Query: 7  MATQSVEGSSRSGPRRTVVGDLLKPLNSEYG 37
          MATQ+VE SSRSGPR T VG LLKPLNSEYG
Sbjct: 1  MATQTVEDSSRSGPRSTTVGKLLKPLNSEYG 31