Jatropha Genome Database

Jcr4S14121.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S14121.10 /short/partial
         (38 letters)

Database: Medicago_aa3.5 
           47,529 sequences; 14,043,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g051370.1 Photosystem II CP47 chlorophyll apoprotein ...    64   2e-11
IMGA|Medtr2g062930.1 Cytochrome b6 (AHRD V1 *-*- B3TN79_BRADI); ...    63   3e-11

>IMGA|Medtr4g051370.1 Photosystem II CP47 chlorophyll apoprotein
           (AHRD V1 *-*- B8R480_TRISU); contains Interpro domain(s)
            IPR017486  Photosystem II, PsbB
           chr04_pseudomolecule_IMGAG_V3.5 15187658-15196421 E
           EGN_Mt100125 20100825
          Length = 968

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/32 (93%), Positives = 31/32 (96%)

Query: 6   FMATQSVEGSSRSGPRRTVVGDLLKPLNSEYG 37
           FMATQ+VE SSRSGPRRTVVGDLLKPLNSEYG
Sbjct: 521 FMATQTVEDSSRSGPRRTVVGDLLKPLNSEYG 552


>IMGA|Medtr2g062930.1 Cytochrome b6 (AHRD V1 *-*- B3TN79_BRADI);
          contains Interpro domain(s)  IPR001056  Photosystem II
          phosphoprotein PsbH chr02_pseudomolecule_IMGAG_V3.5
          19824474-19823110 H EGN_Mt100125 20100825
          Length = 119

 Score = 63.2 bits (152), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/31 (93%), Positives = 30/31 (96%)

Query: 7  MATQSVEGSSRSGPRRTVVGDLLKPLNSEYG 37
          MATQ+VE SSRSGPRRTVVGDLLKPLNSEYG
Sbjct: 1  MATQTVEDSSRSGPRRTVVGDLLKPLNSEYG 31