Jatropha Genome Database

Jcr4S09385.70
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S09385.70 /short/partial
         (77 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015185001 assembled CDS                                        75   6e-15
GSVIVT01013928001 assembled CDS                                        48   7e-07

>GSVIVT01015185001 assembled CDS
          Length = 121

 Score = 75.1 bits (183), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 33/37 (89%), Positives = 35/37 (94%)

Query: 41 QQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPD 77
          ++GYENPREAT RIVCANCHLANK VDIEVPQAVLPD
Sbjct: 5  EEGYENPREATRRIVCANCHLANKLVDIEVPQAVLPD 41


>GSVIVT01013928001 assembled CDS
          Length = 84

 Score = 48.1 bits (113), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 27/35 (77%), Gaps = 1/35 (2%)

Query: 44 YENPREATGRIV-CANCHLANKPVDIEVPQAVLPD 77
          YEN +E   RI+ C NC LANKP+DIEVP+ VLP+
Sbjct: 10 YENLQEVIKRIILCVNCPLANKPMDIEVPRVVLPN 44