Jatropha Genome Database

Jcr4S09385.70
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S09385.70 /short/partial
         (77 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATCG00540.1 | Symbols: PETA | photosynthetic electron transfer A...   153   2e-38

>ATCG00540.1 | Symbols: PETA | photosynthetic electron transfer A
          | chrC:61657-62619 FORWARD LENGTH=320
          Length = 320

 Score =  153 bits (387), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 74/77 (96%)

Query: 1  MQTRKTFSWIKEEITRSISVSLMVYIITWASISNAYPIFAQQGYENPREATGRIVCANCH 60
          MQTR TFSWI+EEITRSISVSL++YIITWASIS+AYPIFAQQ YENPREATGRIVCANCH
Sbjct: 1  MQTRNTFSWIREEITRSISVSLIIYIITWASISSAYPIFAQQNYENPREATGRIVCANCH 60

Query: 61 LANKPVDIEVPQAVLPD 77
          LANKPVDIEVPQ VLPD
Sbjct: 61 LANKPVDIEVPQTVLPD 77