Jatropha Genome Database

Jcr4S09385.70
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S09385.70 /short/partial
         (77 letters)

Database: Medicago_aa3.5 
           47,529 sequences; 14,043,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g050860.1 Apocytochrome F (AHRD V1 *--- C3KEH7_CERDE)...   150   1e-37
IMGA|Medtr4g034760.1 Apocytochrome f (AHRD V1 *-*- C7BF85_9POAL)...   146   2e-36
IMGA|Medtr5g058870.1 Apocytochrome F (AHRD V1 ***- C3KEH7_CERDE)...    50   2e-07

>IMGA|Medtr4g050860.1 Apocytochrome F (AHRD V1 *--- C3KEH7_CERDE);
           contains Interpro domain(s)  IPR002325  Cytochrome f
           chr04_pseudomolecule_IMGAG_V3.5 15020637-15016832 E
           EGN_Mt100125 20100825
          Length = 751

 Score =  150 bits (380), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/77 (92%), Positives = 72/77 (93%)

Query: 1   MQTRKTFSWIKEEITRSISVSLMVYIITWASISNAYPIFAQQGYENPREATGRIVCANCH 60
           MQTR  FSWIKEEITRSISV LM+YIIT A ISNAYPIFAQQGYENPREATGRIVCANCH
Sbjct: 450 MQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCH 509

Query: 61  LANKPVDIEVPQAVLPD 77
           LANKPVDIEVPQAVLPD
Sbjct: 510 LANKPVDIEVPQAVLPD 526


>IMGA|Medtr4g034760.1 Apocytochrome f (AHRD V1 *-*- C7BF85_9POAL);
           contains Interpro domain(s)  IPR002325  Cytochrome f
           chr04_pseudomolecule_IMGAG_V3.5 10864824-10862617 E
           EGN_Mt100125 20100825
          Length = 543

 Score =  146 bits (369), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/77 (90%), Positives = 71/77 (92%)

Query: 1   MQTRKTFSWIKEEITRSISVSLMVYIITWASISNAYPIFAQQGYENPREATGRIVCANCH 60
           MQTR  FSWIKEEITRSISV LM+YIIT A ISNAYPIFAQQGYENPREATGRIVCANCH
Sbjct: 224 MQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCH 283

Query: 61  LANKPVDIEVPQAVLPD 77
           LANKPVDIEVPQAVL D
Sbjct: 284 LANKPVDIEVPQAVLHD 300


>IMGA|Medtr5g058870.1 Apocytochrome F (AHRD V1 ***- C3KEH7_CERDE);
          contains Interpro domain(s)  IPR002325  Cytochrome f
          chr05_pseudomolecule_IMGAG_V3.5 23645788-23646842 E
          EGN_Mt100125 20100825
          Length = 114

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 5/57 (8%)

Query: 21 SLMVYIITWASISNAYPIFAQQGYENPREATGRIVCANCHLANKPVDIEVPQAVLPD 77
           L+++I  W +    YP F ++ Y N    TGR V  +CHLANK VDIEVPQAV  D
Sbjct: 9  KLLIFIGWWVN----YPPFFKE-YTNICVYTGRFVYVDCHLANKHVDIEVPQAVFSD 60