Jatropha Genome Database

Jcr4S09385.50
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S09385.50 
         (184 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01030619001 assembled CDS                                       146   6e-36

>GSVIVT01030619001 assembled CDS
          Length = 131

 Score =  146 bits (368), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 74/86 (86%), Positives = 77/86 (89%), Gaps = 2/86 (2%)

Query: 101 IVCIFRWGFPGKNRRILLRFLMKDIQSIRLEVKEGIYARR--ALYMEIRGRGAIPLTRTD 158
           IVCIF WGFPGKNRRI LR LMKDIQSIR+ VKE IYARR   LYMEIRG+GAIPLTRTD
Sbjct: 46  IVCIFCWGFPGKNRRIFLRLLMKDIQSIRIAVKEDIYARRILVLYMEIRGQGAIPLTRTD 105

Query: 159 ENLTPREIEQKVAELAYFLRVPIEVF 184
           ENLTPRE+EQK AELAYFLRVPIEVF
Sbjct: 106 ENLTPREMEQKAAELAYFLRVPIEVF 131



 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/25 (92%), Positives = 23/25 (92%)

Query: 1  MSWRSERIWIELIAGSRKTSNFCWA 25
          MSWRSERIWIELI GSRKTSNF WA
Sbjct: 1  MSWRSERIWIELIIGSRKTSNFYWA 25