Jatropha Genome Database
- Jcr4S09385.50
BLASTN 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Jcr4S09385.50
(555 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30185.m000927 Photosystem I assembly protein ycf4, putative 426 e-119
30198.m000881 Photosystem I assembly protein ycf4, putative 392 e-109
>30185.m000927 Photosystem I assembly protein ycf4, putative
Length = 312
Score = 426 bits (215), Expect = e-119
Identities = 272/291 (93%)
Strand = Plus / Plus
Query: 265 ggtagtggttatgatcgattcgatagaaaagaaggaatagtgtgtatttttcgctgggga 324
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 22 ggtagtggttatgatcgattcgacagaaaagaaggaatagtgtgtatttttcgctgggga 81
Query: 325 tttcctggaaaaaatcgtcgcatcttactccgattccttatgaaagatattcagtctatt 384
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 82 ttccctggaaaaaatcgtcgcatcttcctccgattccttatgaaggatattcagtctatt 141
Query: 385 aggctagaagttaaagagggtatttacgctcggcgtgccctttatatggaaatccgaggc 444
|| ||||||| ||||||||||||| |||||||||| |||||||||||||| | ||||
Sbjct: 142 agaatagaagtgaaagagggtatttttgctcggcgtgtcctttatatggaaaccaaaggc 201
Query: 445 cggggggccattcctttgactcgtactgatgagaatttgactccgcgagaaattgagcaa 504
|| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 202 cgagggtccattcctttgactcgtactgatgagaatttgactccacgagagattgagcaa 261
Query: 505 aaagtagccgaattggcctattttttgcgtgtaccaattgaagtattttga 555
|| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaggtagcggaattggcctattttttgcgtgtaccaattgaagtattttga 312
>30198.m000881 Photosystem I assembly protein ycf4, putative
Length = 345
Score = 392 bits (198), Expect = e-109
Identities = 270/290 (93%), Gaps = 3/290 (1%)
Strand = Plus / Plus
Query: 266 gtagtggttatgatcgattcgatagaaaagaaggaatagtgtgtatttttcgctggggat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 gtagtggttatgatcgattcgatagaaaagaaggaatagtgtgtatttttcgctggggat 118
Query: 326 ttcctggaaaaaatcgtcgcatcttactccgattccttatgaaagatattcagtctatta 385
| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 119 tccctggaaaaaatcgtcgcatcttcctccgattccttatgaaggatattcagtctatta 178
Query: 386 ggctagaagttaaagagggtatttacgctcggcgtgccctttatatggaaatccgaggcc 445
| ||||||| ||||||||||||| |||||||||| |||||||||||||| | ||||||
Sbjct: 179 gaatagaagtgaaagagggtatttttgctcggcgtgtcctttatatggaaaccagaggcc 238
Query: 446 ggggggccattcctttgactcgtactgatgagaatttgactccgcgagaaattgagcaaa 505
||||| ||||||||||||||| ||||||||||||||||||||| ||||| | ||||| ||
Sbjct: 239 gggggtccattcctttgactcatactgatgagaatttgactccacgagaga-tgagc-aa 296
Query: 506 aagtagccgaattggcctattttttgcgtgtaccaattgaagtattttga 555
| |||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aggtag-cggattggcctattttttgcgtgtaccaattgaagtattttga 345
Score = 113 bits (57), Expect = 1e-24
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 1 atgagttggcgatcagaacgtatatggatagaacttatagcggggtctcgaaaaacaagt 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 atgagttggcgatcagaacgtatatggatagaacttatagcggggtctcgcaaaacaagt 60
Query: 61 a 61
|
Sbjct: 61 a 61