Jatropha Genome Database

Jcr4S09385.50
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S09385.50 
         (184 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30185.m000927 Photosystem I assembly protein ycf4, putative           189   7e-49
30198.m000881 Photosystem I assembly protein ycf4, putative           166   5e-42

>30185.m000927 Photosystem I assembly protein ycf4, putative
          Length = 103

 Score =  189 bits (479), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 96/119 (80%), Positives = 100/119 (84%), Gaps = 16/119 (13%)

Query: 66  MSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRILLRFLMKDI 125
           MSFYGIAG                SGYDRFDRKEGIVCIFRWGFPGKNRRI LRFLMKDI
Sbjct: 1   MSFYGIAG----------------SGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDI 44

Query: 126 QSIRLEVKEGIYARRALYMEIRGRGAIPLTRTDENLTPREIEQKVAELAYFLRVPIEVF 184
           QSIR+EVKEGI+ARR LYME +GRG+IPLTRTDENLTPREIEQKVAELAYFLRVPIEVF
Sbjct: 45  QSIRIEVKEGIFARRVLYMETKGRGSIPLTRTDENLTPREIEQKVAELAYFLRVPIEVF 103


>30198.m000881 Photosystem I assembly protein ycf4, putative
          Length = 114

 Score =  166 bits (421), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 82/98 (83%), Positives = 87/98 (88%), Gaps = 1/98 (1%)

Query: 87  NVGSGYDRFDRKEGIVCIFRWGFPGKNRRILLRFLMKDIQSIRLEVKEGIYARRALYMEI 146
              SGYDRFDRKEGIVCIFRWGFPGKNRRI LRFLMKDIQSIR+EVKEGI+ARR LYME 
Sbjct: 18  KTSSGYDRFDRKEGIVCIFRWGFPGKNRRIFLRFLMKDIQSIRIEVKEGIFARRVLYMET 77

Query: 147 RGRGAIPLTRTDENLTPREIEQKVAELAYFLRVPIEVF 184
           RGRG+IPLT TDENLTPRE+  K + LAYFLRVPIEVF
Sbjct: 78  RGRGSIPLTHTDENLTPREM-SKGSGLAYFLRVPIEVF 114