Jatropha Genome Database
- Jcr4S09385.50
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4S09385.50
(184 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATCG00520.1 | Symbols: YCF4 | unfolded protein binding | chrC:59... 295 1e-80
>ATCG00520.1 | Symbols: YCF4 | unfolded protein binding |
chrC:59772-60326 FORWARD LENGTH=184
Length = 184
Score = 295 bits (755), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 147/184 (79%), Positives = 153/184 (83%)
Query: 1 MSWRSERIWIELIAGSRKTSNFCWAXXXXXXXXXXXXXXXXXYLGKNLISLFPSQQIIFF 60
MSWRSE IWIE I GSRKTSNFCWA YLG+N+ISLFPSQQIIFF
Sbjct: 1 MSWRSESIWIEFITGSRKTSNFCWAFILFLGSLGFLLVGTSSYLGRNVISLFPSQQIIFF 60
Query: 61 PQGIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRILLRF 120
PQGIVMSFYGIAGLFIS YLWCTILWNVGSGYD FDRKEGIV IFRWGFPGK+RRI LRF
Sbjct: 61 PQGIVMSFYGIAGLFISCYLWCTILWNVGSGYDLFDRKEGIVRIFRWGFPGKSRRIFLRF 120
Query: 121 LMKDIQSIRLEVKEGIYARRALYMEIRGRGAIPLTRTDENLTPREIEQKVAELAYFLRVP 180
MKDIQSIR+EVKEG+ ARR LYMEIRG+GAIPL RTDEN T REIEQK AELAYFLRVP
Sbjct: 121 FMKDIQSIRIEVKEGVSARRVLYMEIRGQGAIPLIRTDENFTTREIEQKAAELAYFLRVP 180
Query: 181 IEVF 184
IEVF
Sbjct: 181 IEVF 184