Jatropha Genome Database

Jcr4S09385.50
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S09385.50 
         (184 letters)

Database: Medicago_aa3.5 
           47,529 sequences; 14,043,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g050860.1 Apocytochrome F (AHRD V1 *--- C3KEH7_CERDE)...   160   6e-40
IMGA|Medtr4g034770.1 Photosystem I assembly protein ycf4 (AHRD V...   158   2e-39

>IMGA|Medtr4g050860.1 Apocytochrome F (AHRD V1 *--- C3KEH7_CERDE);
           contains Interpro domain(s)  IPR002325  Cytochrome f
           chr04_pseudomolecule_IMGAG_V3.5 15020637-15016832 E
           EGN_Mt100125 20100825
          Length = 751

 Score =  160 bits (404), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 82/185 (44%), Positives = 114/185 (61%), Gaps = 4/185 (2%)

Query: 4   RSERIWIELIAGSRKTSNFCWAXXXXXXXXXXXXXXXXXYLGKNLISLFPSQQII-FFPQ 62
           RS+  W++++ GSRK  NF WA                 Y G++  SL  S+ ++ F PQ
Sbjct: 37  RSQDAWLDIVPGSRKPINFFWASFTLLGSLGVLYLSVSSYYGRHFFSLISSEFVVPFLPQ 96

Query: 63  GIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRILLRFLM 122
           G+ ++FYGIAGLF+S + W  I WNVGSGY+ FD+K+ +VC FR+GFPG  RRI LR  M
Sbjct: 97  GVTLTFYGIAGLFLSLHWWLLIFWNVGSGYNFFDKKKRMVCFFRYGFPGTYRRIFLRVRM 156

Query: 123 KDIQSIRLEVKEGIYARRA-LYMEIRGRGAIPLTRTDE--NLTPREIEQKVAELAYFLRV 179
           +DIQS+ L+           LYM+ R +G IPLT  D+  + TPR + QK  +L+ FL V
Sbjct: 157 EDIQSLILQANPNPEPSSGVLYMQTREQGTIPLTPVDDYYDRTPRNVIQKAWDLSRFLSV 216

Query: 180 PIEVF 184
           P+E+F
Sbjct: 217 PMEIF 221


>IMGA|Medtr4g034770.1 Photosystem I assembly protein ycf4 (AHRD V1
           ***- C3UNY3_9MAGN); contains Interpro domain(s)
           IPR003359  Photosystem I assembly Ycf4
           chr04_pseudomolecule_IMGAG_V3.5 10865657-10864865 F
           EGN_Mt100125 20100825
          Length = 224

 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 81/184 (44%), Positives = 113/184 (61%), Gaps = 4/184 (2%)

Query: 4   RSERIWIELIAGSRKTSNFCWAXXXXXXXXXXXXXXXXXYLGKNLISLFPSQQII-FFPQ 62
           RS+  W++++ GSRK  NF WA                 Y G++  SL  S+ ++ F PQ
Sbjct: 37  RSQDAWLDIVPGSRKPINFFWASFTLLGSLGVLYLSVSSYYGRHFFSLISSEFVVPFLPQ 96

Query: 63  GIVMSFYGIAGLFISSYLWCTILWNVGSGYDRFDRKEGIVCIFRWGFPGKNRRILLRFLM 122
           G+ ++FYGIAGLF+S + W  I WNVGSGY+ FD+K+ +VC FR+GFPG  RRI LR  M
Sbjct: 97  GVTLTFYGIAGLFLSLHWWLLIFWNVGSGYNFFDKKKRMVCFFRYGFPGTYRRIFLRVRM 156

Query: 123 KDIQSIRLEVKEGIYARRA-LYMEIRGRGAIPLTRTDE--NLTPREIEQKVAELAYFLRV 179
           +DIQS+ L+           LYM+ R +G IPLT  D+  + TPR + QK  +L+ FL V
Sbjct: 157 EDIQSLILQANPNPEPSSGVLYMQTREQGTIPLTPVDDYYDRTPRNVIQKAWDLSRFLSV 216

Query: 180 PIEV 183
           P+E+
Sbjct: 217 PMEI 220