Jatropha Genome Database

Jcr4S09385.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S09385.10
         (167 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013856001 assembled CDS                                       182   8e-47

>GSVIVT01013856001 assembled CDS
          Length = 116

 Score =  182 bits (461), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 97/145 (66%), Positives = 100/145 (68%), Gaps = 35/145 (24%)

Query: 23  VVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGGIHVWHMPAL 82
           +VGKLE ER+ITLGFVDLLRDDF+EKDRS GIYFTQDWV LP VL VASG IHVWHMP L
Sbjct: 7   LVGKLEEEREITLGFVDLLRDDFVEKDRSHGIYFTQDWVFLPSVLLVASGSIHVWHMPTL 66

Query: 83  TEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREASK 142
           TEIFGDD                                    GRDLAREGNEIIR ASK
Sbjct: 67  TEIFGDDF-----------------------------------GRDLAREGNEIIRAASK 91

Query: 143 WSPELAAACEVWKEIKFEFQAMDTL 167
           WSPELAAACEVWKEIKFEF AMDTL
Sbjct: 92  WSPELAAACEVWKEIKFEFPAMDTL 116