Jatropha Genome Database
- Jcr4S09385.10
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4S09385.10
(167 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ATCG00490.1 | Symbols: RBCL | ribulose-bisphosphate carboxylases... 320 2e-88
>ATCG00490.1 | Symbols: RBCL | ribulose-bisphosphate carboxylases |
chrC:54958-56397 FORWARD LENGTH=479
Length = 479
Score = 320 bits (821), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 153/167 (91%), Positives = 159/167 (95%)
Query: 1 MHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDW 60
MHFRVLAKALRLSGGDHIHAGTVVGKLEG+R+ TLGFVDLLRDD++EKDRSRGI+FTQDW
Sbjct: 309 MHFRVLAKALRLSGGDHIHAGTVVGKLEGDRESTLGFVDLLRDDYVEKDRSRGIFFTQDW 368
Query: 61 VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 120
VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV
Sbjct: 369 VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 428
Query: 121 QARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 167
QARNEGRDLA EGNEIIREA KWSPELAAACEVWKEI F F +D L
Sbjct: 429 QARNEGRDLAVEGNEIIREACKWSPELAAACEVWKEITFNFPTIDKL 475