Jatropha Genome Database

Jcr4S09385.10
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S09385.10
         (167 letters)

Database: Medicago_aa3.5 
           47,529 sequences; 14,043,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g055010.1 Ribulose bisphosphate carboxylase large cha...   337   2e-93
IMGA|Medtr7g117930.1 Ribulose bisphosphate carboxylase large cha...   337   2e-93
IMGA|Medtr7g021770.1 Ribulose bisphosphate carboxylase large cha...   336   3e-93
IMGA|Medtr3g035680.1 Ribulose bisphosphate carboxylase large cha...   316   5e-87
IMGA|Medtr4g051270.1 Ribulose bisphosphate carboxylase large cha...   289   6e-79
IMGA|Medtr8g037100.1 ATP synthase subunit beta, chloroplastic (A...   165   1e-41
IMGA|Medtr5g087240.1 Ribulose bisphosphate carboxylase large cha...   124   2e-29
IMGA|Medtr4g076920.1 Ribulose bisphosphate carboxylase large cha...    82   1e-16
IMGA|Medtr7g084780.1 Ribulose bisphosphate carboxylase large cha...    61   3e-10

>IMGA|Medtr6g055010.1 Ribulose bisphosphate carboxylase large chain
           (AHRD V1 ***- Q9GDM7_9ROSI); contains Interpro domain(s)
            IPR000685  Ribulose bisphosphate carboxylase, large
           subunit, C-terminal chr06_pseudomolecule_IMGAG_V3.5
           11225479-11216719 E EGN_Mt100125 20100825
          Length = 475

 Score =  337 bits (863), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 160/167 (95%), Positives = 166/167 (99%)

Query: 1   MHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDW 60
           MHFRVLAKALR+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDF+EKDRSRGI+FTQDW
Sbjct: 309 MHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSRGIFFTQDW 368

Query: 61  VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 120
           VSLPGVLPVASGGIHVW+MPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV
Sbjct: 369 VSLPGVLPVASGGIHVWYMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 428

Query: 121 QARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 167
           QARNEGRDLAREGNEIIREA+KWSPELAAACEVWKEIKFEF AMDT+
Sbjct: 429 QARNEGRDLAREGNEIIREATKWSPELAAACEVWKEIKFEFPAMDTI 475


>IMGA|Medtr7g117930.1 Ribulose bisphosphate carboxylase large chain
           (AHRD V1 ***- Q9GDM7_9ROSI); contains Interpro domain(s)
            IPR000685  Ribulose bisphosphate carboxylase, large
           subunit, C-terminal chr07_pseudomolecule_IMGAG_V3.5
           38470541-38473396 E EGN_Mt100125 20100825
          Length = 475

 Score =  337 bits (863), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 160/167 (95%), Positives = 166/167 (99%)

Query: 1   MHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDW 60
           MHFRVLAKALR+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDF+EKDRSRGI+FT+DW
Sbjct: 309 MHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSRGIFFTRDW 368

Query: 61  VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 120
           VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV
Sbjct: 369 VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 428

Query: 121 QARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 167
           QARNEGRDLAREGNEIIREA+KWSPELAAACEVWKEIKFEF AMDT+
Sbjct: 429 QARNEGRDLAREGNEIIREATKWSPELAAACEVWKEIKFEFPAMDTI 475


>IMGA|Medtr7g021770.1 Ribulose bisphosphate carboxylase large chain
           (AHRD V1 ***- Q9GDM7_9ROSI); contains Interpro domain(s)
            IPR017444  Ribulose bisphosphate carboxylase, large
           subunit, N-terminal  IPR000685  Ribulose bisphosphate
           carboxylase, large subunit, C-terminal
           chr07_pseudomolecule_IMGAG_V3.5 5333502-5331907 E
           EGN_Mt100125 20100825
          Length = 475

 Score =  336 bits (862), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 160/167 (95%), Positives = 165/167 (98%)

Query: 1   MHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDW 60
           MHFRVLAKALR+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDF+EKDRSRGI+FTQDW
Sbjct: 309 MHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSRGIFFTQDW 368

Query: 61  VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 120
           VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV
Sbjct: 369 VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 428

Query: 121 QARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 167
           QARNEGRDLAREGNEIIREA+KWSPELAAACEVWKEIKFE  AMDT+
Sbjct: 429 QARNEGRDLAREGNEIIREATKWSPELAAACEVWKEIKFELPAMDTI 475


>IMGA|Medtr3g035680.1 Ribulose bisphosphate carboxylase large chain
           (Fragment) (AHRD V1 ***- Q8WLF4_9ROSI); contains
           Interpro domain(s)  IPR000685  Ribulose bisphosphate
           carboxylase, large subunit, C-terminal
           chr03_pseudomolecule_IMGAG_V3.5 11745925-11747720 E
           EGN_Mt100125 20100825
          Length = 177

 Score =  316 bits (809), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 153/163 (93%), Positives = 158/163 (96%)

Query: 5   VLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLP 64
           V A   R+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDF+EKDRSRGI+FTQDWVSLP
Sbjct: 15  VSATRSRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSRGIFFTQDWVSLP 74

Query: 65  GVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 124
           GVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN
Sbjct: 75  GVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACVQARN 134

Query: 125 EGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 167
           EGRDLAREGNEIIREA+KWSPELAAACEVWKEIKFEF AMDT+
Sbjct: 135 EGRDLAREGNEIIREATKWSPELAAACEVWKEIKFEFPAMDTI 177


>IMGA|Medtr4g051270.1 Ribulose bisphosphate carboxylase large chain
           (AHRD V1 ***- Q9GDM7_9ROSI); contains Interpro domain(s)
            IPR000685  Ribulose bisphosphate carboxylase, large
           subunit, C-terminal chr04_pseudomolecule_IMGAG_V3.5
           15156497-15158093 E EGN_Mt100125 20100825
          Length = 456

 Score =  289 bits (739), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 143/167 (85%), Positives = 147/167 (88%), Gaps = 19/167 (11%)

Query: 1   MHFRVLAKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDW 60
           MHFRVLAKALR+SGGDHIHAGTVVGKLEGERDITLGFVDLLRDDF+EKDRSRG       
Sbjct: 309 MHFRVLAKALRMSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFVEKDRSRG------- 361

Query: 61  VSLPGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 120
                       GIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV
Sbjct: 362 ------------GIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGNAPGAVANRVALEACV 409

Query: 121 QARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFQAMDTL 167
           QARNEGRDLAREGNEIIREA+KWSPELAAACEVWKEIKFEF AMDT+
Sbjct: 410 QARNEGRDLAREGNEIIREATKWSPELAAACEVWKEIKFEFPAMDTI 456


>IMGA|Medtr8g037100.1 ATP synthase subunit beta, chloroplastic (AHRD
            V1 *-*- Q95DR6); contains Interpro domain(s)  IPR005722
            ATPase, F1 complex, beta subunit
            chr08_pseudomolecule_IMGAG_V3.5 8526664-8538414 E
            EGN_Mt100125 20100825
          Length = 2706

 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 74/86 (86%), Positives = 85/86 (98%)

Query: 7    AKALRLSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGV 66
            +KALR+SGGDH+HAGTVVGKLEGER++TLGFVDLLRDD+IEKDRSRG++FTQDWVS+PGV
Sbjct: 1622 SKALRMSGGDHVHAGTVVGKLEGEREMTLGFVDLLRDDYIEKDRSRGVFFTQDWVSMPGV 1681

Query: 67   LPVASGGIHVWHMPALTEIFGDDSVL 92
            +PVASGGIHVWHMPALTEIFGDD+ L
Sbjct: 1682 IPVASGGIHVWHMPALTEIFGDDAGL 1707


>IMGA|Medtr5g087240.1 Ribulose bisphosphate carboxylase large chain
           (Fragment) (AHRD V1 *-*- Q95B27_PRUMU); contains
           Interpro domain(s)  IPR002290  Serine/threonine protein
           kinase chr05_pseudomolecule_IMGAG_V3.5 36771859-36778709
           H EGN_Mt100125 20100825
          Length = 671

 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 62/66 (93%)

Query: 102 PWGNAPGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEF 161
           PWGNAPGAVANRVALEACVQARNEGRDLA EGNEII EA+KWSPELAAACEV KEIKF+F
Sbjct: 606 PWGNAPGAVANRVALEACVQARNEGRDLACEGNEIICEATKWSPELAAACEVGKEIKFKF 665

Query: 162 QAMDTL 167
            AMDT+
Sbjct: 666 SAMDTI 671


>IMGA|Medtr4g076920.1 Ribulose bisphosphate carboxylase large
          chain (Fragment) (AHRD V1 ***- Q9GHW1_9ROSI); contains
          Interpro domain(s)  IPR000685  Ribulose bisphosphate
          carboxylase, large subunit, C-terminal
          chr04_pseudomolecule_IMGAG_V3.5 24908961-24908247 H
          EGN_Mt100125 20100825
          Length = 224

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/43 (86%), Positives = 41/43 (95%)

Query: 12 LSGGDHIHAGTVVGKLEGERDITLGFVDLLRDDFIEKDRSRGI 54
          +SGGDHI+A TVVGKLEGERDITLGFVDLLRDDF+EKDRSR +
Sbjct: 1  MSGGDHINASTVVGKLEGERDITLGFVDLLRDDFVEKDRSRSV 43


>IMGA|Medtr7g084780.1 Ribulose bisphosphate carboxylase large chain
           (Fragment) (AHRD V1 *-*- Q95B27_PRUMU); contains
           Interpro domain(s)  IPR000685  Ribulose bisphosphate
           carboxylase, large subunit, C-terminal
           chr07_pseudomolecule_IMGAG_V3.5 25313175-25313467 H
           EGN_Mt100125 20100825
          Length = 69

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/33 (81%), Positives = 28/33 (84%)

Query: 121 QARNEGRDLAREGNEIIREASKWSPELAAACEV 153
            ARNEGRDL REGNEII EA+KWSPEL  ACEV
Sbjct: 37  HARNEGRDLTREGNEIICEATKWSPELVVACEV 69