Jatropha Genome Database

Jcr4S05943.70
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S05943.70
         (954 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008318001 assembled CDS                                      1049   0.0  
GSVIVT01036887001 assembled CDS                                       115   1e-25
GSVIVT01031413001 assembled CDS                                       106   6e-23
GSVIVT01020209001 assembled CDS                                        88   2e-17

>GSVIVT01008318001 assembled CDS
          Length = 868

 Score = 1049 bits (2713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 560/962 (58%), Positives = 663/962 (68%), Gaps = 108/962 (11%)

Query: 7   MDTLFQRTLDDIIKGLRHQQTGESAFISKVMEEIRREIKSTDLHTKSIALHKLTYLNSIH 66
           MD+LFQR+L+D+IKG+R     E  FISK  ++IRREIKSTDLHTKS+AL KLTYL++++
Sbjct: 1   MDSLFQRSLEDLIKGIRLNLLTEPTFISKSTDDIRREIKSTDLHTKSVALQKLTYLSALY 60

Query: 67  FIDISWAAFHAIECISSPNFSHKKIGYLAISQSFNESTPVILLITNQLRKDLRSNNEFEV 126
            +D+SWAAFH +E +SS  F+HKKI YLA + SF+ +T V LL T+Q RKDL S N FEV
Sbjct: 61  GLDMSWAAFHVVELMSSSAFAHKKIAYLAAAHSFHAATDVSLLTTHQFRKDLNSANPFEV 120

Query: 127 SLALECLSTIGTVDLCRDLTPEVFTLMSSSKLLVRKKALGVILRVFGKYPDAVRVCFKRL 186
           SLAL C S I T  L R+LTPE+FTL+SSSK  + KKA+ VILRVF +YPDA RVCFKRL
Sbjct: 121 SLALHCFSIIATPHLARELTPEIFTLLSSSKPSIGKKAVAVILRVFSQYPDAARVCFKRL 180

Query: 187 VECLDGTDQQIASAVIGVFCELASKDPRSYLPLAPEFYRVLVDSRNNWVLIKVLKIFAKL 246
           VE L+ +D    SA +GVFCELA KDP+SYLPLAPEFYR+LVDSRNNWVLIK +KIF KL
Sbjct: 181 VENLESSDPHTLSAAMGVFCELAVKDPKSYLPLAPEFYRILVDSRNNWVLIKAVKIFGKL 240

Query: 247 APLEPRLAKRVVEPICDIMRRTGAKSLMFECIRTVATSFTDYESAVELAVAKNGEFLTDD 306
           APLEPRLA RVVEPIC+ MR+TGAKSLMFEC+RTV TS  +YESAV+LAV K  E L DD
Sbjct: 241 APLEPRLAMRVVEPICEYMRKTGAKSLMFECVRTVVTSLAEYESAVKLAVVKIRELLVDD 300

Query: 307 DPNLKYLGLHVLSIIAPKHLWAVLQNKEVVIMSLSDADPNIKLESLRLVMAMVSESNVVE 366
           D NLKYLGL  L+++APKHLWAVL+NKEVVI SLSDADPNIKLESLR++M MVSE NV E
Sbjct: 301 DSNLKYLGLQALTVVAPKHLWAVLENKEVVIKSLSDADPNIKLESLRILMVMVSERNVAE 360

Query: 367 FCRVLVNYSLKSDPEFCNEILGSILSRCRQNFYEIIVDFDWYVSLLGEISRIPHCQKGEE 426
             RVLVNY++KSDPEFCNEILGSILS C +N YEII DFDWYVSLLGE+SRIPHCQKGEE
Sbjct: 361 ISRVLVNYAIKSDPEFCNEILGSILSACSRNVYEIIEDFDWYVSLLGEMSRIPHCQKGEE 420

Query: 427 IENQLIDIGMRVKDVRLPLVHVGRDLLIDPALLGNPFLHRILSAAAWVCGEYVKFSKNPV 486
           IE+QLIDIGMRVKD RL LV VGRDLLIDPALLGNPFLHRILSAAAWV GEYV+FSKNP 
Sbjct: 421 IEHQLIDIGMRVKDARLQLVRVGRDLLIDPALLGNPFLHRILSAAAWVSGEYVEFSKNPF 480

Query: 487 ELVEALLQPRTSLLPPSVRTVYMQSAFKILIFCLHFYLLQRGCIADDKASEVMDLASQRE 546
           EL+EALLQPR SLLPPS+R VY+QSAFK+LIFCLH YL  R  IA               
Sbjct: 481 ELMEALLQPRISLLPPSIRAVYVQSAFKVLIFCLHSYLFYRETIA--------------- 525

Query: 547 CSGMSDLATHKASACYEQEEGFNPRDSNRSYEDLSIIDGGDDQTTSSPGKSLTHESFSNL 606
           CS  S       +   E+++GF                              THES  NL
Sbjct: 526 CSPSS-----PDNFVSERKDGF------------------------------THESIGNL 550

Query: 607 LTLIELALNPLSRNYDVEVQERARNILGFVELIKQQISDCFFPKDVNXXXXXXXXXXXXX 666
           L LIE+AL PLS + +VE+QERARN+LG +ELIKQ++      K+ N             
Sbjct: 551 LNLIEVALGPLSGSREVEIQERARNVLGLIELIKQELPG-LVKKEGNFEREGLKFPKIIE 609

Query: 667 XXYDAFAEELGPVSVNAQERVPVPDGLMLKENLSDLEAICGDVQXXXXXXXXXXXXYGED 726
             +DAF++ELGPV+ NAQERVP+PDGL+L+ENL DLE ICG+ Q            + ++
Sbjct: 610 LMHDAFSKELGPVAANAQERVPIPDGLILRENLGDLEMICGNDQLPTSSSFSFGIPHSKE 669

Query: 727 VGASPITQXXXXXXXXXXXXXLLAEHRKRHGLYYLPSEKNEILANDYPPANDLKSSIDTH 786
               P ++             LLAEHRK HGLYYLPSEKN++ +NDYPPAND K   + +
Sbjct: 670 KVGLPQSK-GESSEASTESTSLLAEHRKLHGLYYLPSEKNDV-SNDYPPANDPKLQDNLN 727

Query: 787 DDAQDLVKLADQSLVSKRKSSLAKPRPVVVKLDEGD-VPLTAKKPDRQDGLLSGAVRDIL 845
           DDA+DLVKL +QSL+ K+K + AKPRPVVVKLDEGD  P+ AKK + ++ LLSGAVRD+L
Sbjct: 728 DDAKDLVKLTEQSLLQKKKPNHAKPRPVVVKLDEGDEAPIAAKKLELKEDLLSGAVRDVL 787

Query: 846 LANP---------SDETSSNRKGKEKQNVD----PLESREILGGEKPDLGNPXXXXXXXX 892
           L N          +D++SS R+GKEK N D    P E RE                    
Sbjct: 788 LGNEAVSTSQSNLTDKSSSKRRGKEKLNTDHPSGPKEERE-------------------- 827

Query: 893 XXGKEKGTKSVEKKNADENDDXXXXXXXXXXXXXXXXXXXQRADAPTLTVVTQTPVIPDF 952
               E G K  +K +   N                     QRA+ P   VVTQTP+IPDF
Sbjct: 828 ----ENGQKDKQKSSHRHN----------------RHKSRQRAEGPN-NVVTQTPLIPDF 866

Query: 953 LL 954
           LL
Sbjct: 867 LL 868


>GSVIVT01036887001 assembled CDS
          Length = 884

 Score =  115 bits (287), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 215/498 (43%), Gaps = 50/498 (10%)

Query: 17  DIIK--GLRHQQTGESAFISKVMEEIRREIKSTDLHTKSIA--LHKLTYLNSIHFIDISW 72
           D++K  G    +  E   +   +E ++R I   D+  + +   + +L Y+  +   D S+
Sbjct: 15  DLVKSIGEARSKAEEDRIVLHEIETLKRRIVEPDIPKRKMKEFIIRLVYVEMLGH-DASF 73

Query: 73  AAFHAIECISSPNFSHKKIGYLAISQSFNESTPVILLITNQLRKDLRSNNEFEVSLALEC 132
              HA++     +   K+ GYLA++   NE   +I+LI N ++KDL+S+N   V  AL  
Sbjct: 74  GYIHAVKMTHDDSLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLVVCAALNA 133

Query: 133 LSTIGTVDLCRDLTPEVFTLMSSSKLLVRKKALGVILRVFGKYPDAVRVCFKRLVECLDG 192
           +  +   +    + P+V  L+  SK  VRKKA+  + R + + P +V        + L  
Sbjct: 134 VCKLINEETIPAVLPQVVELLGHSKEAVRKKAIMALHRFYQRSPSSVTHLVSNFRKKLCD 193

Query: 193 TDQQIASAVIGVFCELASKDPRSYLPLAPEFYRVL--VDSRN------------NWVLIK 238
            D  +  A +    +L + D  SY  L   F  +L  V  R              ++ I+
Sbjct: 194 NDPGVMGATLCPLFDLIAVDANSYKDLVISFVSILKQVAERRLPKTYDYHQMPAPFIQIR 253

Query: 239 VLKIFAKLAPLEPRLAKRVVEPICDIMRRTGAKS-----LMFECIRTVATSFTDYESAVE 293
           +LKI A L   + + ++ +   + DI R+  + S     +++ECI  V++ + +    +E
Sbjct: 254 LLKILALLGSGDRQASENMYTVVGDIFRKCDSTSNIGNAVLYECICCVSSIYPN-PKLLE 312

Query: 294 LAVAKNGEFLTDDDPNLKYLGLHVLSIIAPKHLWAVLQNKEVVIMSLSDADPNIKLESLR 353
            A      FL  D  NLKY+G+  LS +         Q++  VI  L D D  +K ++  
Sbjct: 313 AAADVISRFLKSDSHNLKYMGIDALSRLIKISPEIAEQHQLAVIDCLEDPDDTLKRKTFE 372

Query: 354 LVMAMVSESNVVEFCRVLVNYSLK-SDPEFCNEILGSILSRCRQNFYEIIVDFDWYVSLL 412
           L+  M   SNV      +++Y +  +D  +  E    I SRC +   +      W++  +
Sbjct: 373 LLYRMTKSSNVEVIVDRMIDYMISINDNHYKTE----IASRCVELAEQFAPSNHWFIQTM 428

Query: 413 GEISRIPHCQKGEEIENQLIDIGMRV-----------KDVRLPLVHVGRDLLIDPALLGN 461
            ++        G+ +  ++ D  MR+            D +L    V   L I    +G 
Sbjct: 429 NKVFE----HAGDLVNIKVADNLMRLIAEGFGEDDDTADCQLRSSAVESYLRI----IGE 480

Query: 462 PFL-HRILSAAAWVCGEY 478
           P L    L    WV GEY
Sbjct: 481 PKLPSAFLQVICWVLGEY 498


>GSVIVT01031413001 assembled CDS
          Length = 1015

 Score =  106 bits (264), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 117/505 (23%), Positives = 222/505 (43%), Gaps = 52/505 (10%)

Query: 13  RTLDDIIKGLRHQQTGESAF--ISKVMEEIRREIKSTDLHT---KSIALHKLTYLNSIHF 67
           R L   I  +R+ Q  E     + K +  +R   K+    T   K   + K+ Y+  + +
Sbjct: 7   RGLSVFISDIRNCQNKEQERLRVDKELGNVRTRFKNEKGLTPYEKKKYVWKMLYIYMLGY 66

Query: 68  IDISWAAFHAIECISSPNFSHKKIGYLAISQSFNESTPVILLITNQLRKDLRSNNEFEVS 127
            D+ +    A+  IS+P +  K++GY+  S   NE+   + L  N +R D+   NE    
Sbjct: 67  -DVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQC 125

Query: 128 LALECLSTIGTVDLCRDLTPEVFTLM--SSSKLLVRKKALGVILRVFGKYPDAVRV--CF 183
           LAL  +  IG  +    L P+V  L+  SS + LVRKKA   +LR++ K PD V V    
Sbjct: 126 LALTMVGNIGGREFAESLAPDVQKLLISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWS 185

Query: 184 KRLVECLDGTDQQIASAVIGVFCELASKDPRSYLPLAPEFYRVLVD-SRNN--------- 233
            R+ + LD  D  + ++ + +   L S +  +Y    P+  ++L   +RN          
Sbjct: 186 DRMAQLLDERDLGVLTSSMSLLVALVSNNHDAYWSCLPKCVKILERLARNQDVPQEYTYY 245

Query: 234 -----WVLIKVLKIFAKLAPLE-PRLAKRVVEPICDIMRRT----------GAKSLMFEC 277
                W+ +K ++       +E P   + + E +  I+  T           + +++FE 
Sbjct: 246 GIPTPWLQVKTMRALQYFPTIEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHAVLFEA 305

Query: 278 IRTVATSFTDYESAVELAVAKNGEFLTDDDPNLKYLGLHVLS-IIAPKHLWAVLQNKEV- 335
           +  V     + E   +  VA  G+F+   +PN++YLGL  ++ ++    +  +++  +  
Sbjct: 306 LALVMHLDAEKEMMSQ-CVALLGKFIAVREPNIRYLGLENMTRMLMVSDVQDIIKRHQAQ 364

Query: 336 VIMSLSDADPNIKLESLRLVMAMVSESNVVEFCRVLVNYSLKSDPEFCNE--ILGSILSR 393
           +I SL D D +I+  +L L+  M   SN  +    L+ Y   +D     E  +  +IL+ 
Sbjct: 365 IITSLKDPDISIRRRALDLLYGMCDISNAKDIVEELLQYLSSADFAMREELSLKAAILAE 424

Query: 394 CRQNFYEIIVDFDWYVSLLGEISRIPHCQKGEEIENQLIDIGMRVKDVRLPLVHVGRDLL 453
                 +   D  WYV ++ ++         ++I  +++      +D++       R+ L
Sbjct: 425 ------KFAPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYL 478

Query: 454 IDPALLGNPFLHRILSAAAWVCGEY 478
             PA+        ++  +A++ GEY
Sbjct: 479 DKPAI-----HETMVKVSAYLLGEY 498


>GSVIVT01020209001 assembled CDS
          Length = 878

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 3/165 (1%)

Query: 15  LDDIIKGLRHQQTG--ESAFISKVMEEIRREIKSTDLHTKSIALHKLTYLNSIHFIDISW 72
           L D+I+ +R  +T   E A + K    IR  +   D   +   L KL +++ + +    +
Sbjct: 10  LRDMIRAIRACKTAAEERAVVRKECAAIRASVSENDHDYRHRNLAKLMFIHMLGY-PTHF 68

Query: 73  AAFHAIECISSPNFSHKKIGYLAISQSFNESTPVILLITNQLRKDLRSNNEFEVSLALEC 132
                ++ I++  F  K+IGYL +    +E   V++L+TN L++DL  NN++ V LAL  
Sbjct: 69  GQMECLKLIAAAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHNNQYIVGLALCA 128

Query: 133 LSTIGTVDLCRDLTPEVFTLMSSSKLLVRKKALGVILRVFGKYPD 177
           L  I + ++ RDL PEV  LM      +RKKA    +R+  K PD
Sbjct: 129 LGNICSAEMARDLAPEVERLMQFRDPNIRKKAALCSIRIIRKVPD 173