Jatropha Genome Database

Jcr4S05943.70
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S05943.70
         (954 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29747.m001105 conserved hypothetical protein                          950   0.0  
29883.m002039 AP-1 complex subunit gamma-2, putative                  119   5e-27
29827.m002653 AP-1 complex subunit gamma-2, putative                  114   3e-25
29991.m000630 AP-2 complex subunit alpha, putative                    102   1e-21

>29747.m001105 conserved hypothetical protein
          Length = 848

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/727 (67%), Positives = 549/727 (75%), Gaps = 14/727 (1%)

Query: 240 LKIFAKLAPLEPRLAKRVVEPICDIMRRTGAKSLMFECIRTVATSFTDYESAVELAVAKN 299
            +IFAKLAPLEPRLAKRVVEPICD MRRT AKSL+FE IRTV TSFT YESAV+LAV++ 
Sbjct: 124 FEIFAKLAPLEPRLAKRVVEPICDHMRRTEAKSLIFESIRTVVTSFTGYESAVKLAVSRI 183

Query: 300 GEFLTDDDPNLKYLGLHVLSIIAPKHLWAVLQNKEVVIMSLSDADPNIKLESLRLVMAMV 359
            EFL DDD NLKYLGLH L+IIAPKHLWAVL+NKEVVI SLSDADPN+K ESLRLVMAMV
Sbjct: 184 REFLVDDDQNLKYLGLHALAIIAPKHLWAVLENKEVVIESLSDADPNVKGESLRLVMAMV 243

Query: 360 SESNVVEFCRVLVNYSLKSDPEFCNEILGSILSRCRQNFYEIIVDFDWYVSLLGEISRIP 419
           SESNVVE CRVL+NY+LKSDPEFCNEIL SILS+C QN YE+IVDFDWY SLLGE+SRIP
Sbjct: 244 SESNVVEICRVLINYALKSDPEFCNEILASILSKCSQNVYEVIVDFDWYASLLGEMSRIP 303

Query: 420 HCQKGEEIENQLIDIGMRVKDVRLPLVHVGRDLLIDPALLGNPFLHRILSAAAWVCGEYV 479
           HCQK EEIENQLIDIGMRV+DVRL LV +GRDLLIDPALLGN FLHRILSAAAWVCGEYV
Sbjct: 304 HCQKSEEIENQLIDIGMRVRDVRLELVRIGRDLLIDPALLGNSFLHRILSAAAWVCGEYV 363

Query: 480 KFSKNPVELVEALLQPRTSLLPPSVRTVYMQSAFKILIFCLHFYLLQRGCIADDKASEVM 539
           +FS+NP+EL+EALLQPRTSLLPPS+RTVYMQSAFKIL+FCLH Y L +     D  SEV 
Sbjct: 364 EFSRNPIELMEALLQPRTSLLPPSIRTVYMQSAFKILVFCLHSYFLYKENNTADMISEVR 423

Query: 540 DLASQRECSGMSDLATHKASACYEQEEGFNPRDSNRSYEDLSIIDGGDDQTTSSPGKSLT 599
           D  S RE  G SDLA +K  A YEQ+EGFNPRDSN+SYEDLSI+D GDD+T++   K  T
Sbjct: 424 DFTSHRESPGSSDLAANKPPAYYEQDEGFNPRDSNKSYEDLSIMDTGDDRTSNLLEKGFT 483

Query: 600 HESFSNLLTLIELALNPLSRNYDVEVQERARNILGFVELIKQQISDCFFPKDVNXXXXXX 659
           HES   LL LIELA  PLS + DVEVQE ARN+LGF+ELIKQ+I DCF  KD+       
Sbjct: 484 HESIIKLLNLIELAFGPLSGSCDVEVQELARNVLGFLELIKQEICDCFSSKDIG-FKGDM 542

Query: 660 XXXXXXXXXYDAFAEELGPVSVNAQERVPVPDGLMLKENLSDLEAICGDVQXXXXXXXXX 719
                    +DAF+E+LGPVSVNAQERVP+PDGL+LKENL+DLE ICG+VQ         
Sbjct: 543 KASKVVDLVHDAFSEDLGPVSVNAQERVPIPDGLVLKENLADLEEICGNVQLPLSNSFSL 602

Query: 720 XXXYGEDVGAS-PITQXXXXXXXXXXXXXLLAEHRKRHGLYYLPSEKNEILANDYPPAND 778
              YGE +GAS  I               LLAEHRKRHGLYYLPSEKNEI  NDYPPAND
Sbjct: 603 GSPYGESIGASESIPPSKEELEPSSESSSLLAEHRKRHGLYYLPSEKNEITTNDYPPAND 662

Query: 779 LKSSIDTHDDAQDLVKLADQSLVSKRKSSLAKPRPVVVKLDEGDV-PLTAKKPDRQDGLL 837
            KS I T+DDAQDLVKLADQSL+SKRK + AKPRPVVVKLDEGDV P+ AKKP+ +D LL
Sbjct: 663 PKSCISTNDDAQDLVKLADQSLISKRKPNYAKPRPVVVKLDEGDVAPINAKKPEIKDDLL 722

Query: 838 SGAVRDILL----------ANPSDETSSNRKGKEKQNVDPLESREILGGEKPDLGNPXXX 887
           S AVR++LL           N SD+ SS RKGKEKQNVD  ESRE LGGEKPDLGN    
Sbjct: 723 SDAVREVLLGNTTIPALSQGNSSDKLSSKRKGKEKQNVDLPESRENLGGEKPDLGNSSSR 782

Query: 888 XXXXXXXGKEKGTKSVEKKNADENDDXXXXXXXXXXXXXXXXXXXQRADAPTLTVVTQTP 947
                  GKE+  KS EK N DE +D                   QRA+   L +V QTP
Sbjct: 783 KSKHRSQGKERSKKSTEKNNTDEREDHEEKGKQKSKHRHGRHKTQQRAET-RLNLVAQTP 841

Query: 948 VIPDFLL 954
           VIPDFLL
Sbjct: 842 VIPDFLL 848



 Score =  242 bits (618), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 126/199 (63%), Positives = 154/199 (77%), Gaps = 7/199 (3%)

Query: 1   MASPSLMDTLFQRTLDDIIKGLRHQQTGESAFISKVMEEIRREIKSTDLHTKSIALHKLT 60
           MAS SL+DTLFQRTLDDIIKGLRHQQTGESAFISK++EEIRREIKSTDLHTKS+AL KLT
Sbjct: 1   MASTSLIDTLFQRTLDDIIKGLRHQQTGESAFISKIVEEIRREIKSTDLHTKSVALQKLT 60

Query: 61  YLNSIHFIDISWAAFHAIECISSPNFSHKKIGYLAISQSFNESTPVILLITNQLRKDLRS 120
           YLNS+HFID+SWAAFHA+ECISSPNFSHKK+GYLAISQSF+ESTPV+LLITNQLRKDL+S
Sbjct: 61  YLNSLHFIDMSWAAFHAVECISSPNFSHKKLGYLAISQSFHESTPVMLLITNQLRKDLKS 120

Query: 121 NNEFEVSLALECLSTIGTVDLCRDLTPEVFTLM--SSSKLLVRKKALGVILRVFGKYPDA 178
           +NEFE+   L  L       L + +   +   M  + +K L+  +++  ++  F  Y  A
Sbjct: 121 SNEFEIFAKLAPLEP----RLAKRVVEPICDHMRRTEAKSLIF-ESIRTVVTSFTGYESA 175

Query: 179 VRVCFKRLVECLDGTDQQI 197
           V++   R+ E L   DQ +
Sbjct: 176 VKLAVSRIREFLVDDDQNL 194


>29883.m002039 AP-1 complex subunit gamma-2, putative
          Length = 875

 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 120/503 (23%), Positives = 219/503 (43%), Gaps = 40/503 (7%)

Query: 15  LDDIIKGLRHQQTG--ESAFISKVMEEIRREIKSTDLHTKSIALHKLTYLNSIHFIDISW 72
           L D+I+ +R  +T   E A + K    IR  I   D   +   L KL +++ + +    +
Sbjct: 10  LRDMIRAIRACKTAAEERAVVRKECAAIRAAINENDQDYRHRNLAKLMFIHMLGY-PTHF 68

Query: 73  AAFHAIECISSPNFSHKKIGYLAISQSFNESTPVILLITNQLRKDLRSNNEFEVSLALEC 132
                ++ I+S  F  K+IGYL +    +E   V++L+TN L++DL  +N++ V LAL  
Sbjct: 69  GQMECLKLIASAGFPEKRIGYLGLMLLLDERQEVLMLVTNSLKQDLNHSNQYIVGLALCA 128

Query: 133 LSTIGTVDLCRDLTPEVFTLMSSSKLLVRKKALGVILRVFGKYPDAVRVCFKRLVECLDG 192
           L  I + ++ RDL PEV  L+      +RKKA    +R+  K PD            L  
Sbjct: 129 LGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFINPAAALLKE 188

Query: 193 TDQQIASAVIGVFCELASKDPRS--YL------------------PLAPEFYRVLVDSRN 232
               +    I +  +L    P +  Y                   P APE+   +    +
Sbjct: 189 KHHGVLITGIQLCTDLCKVSPEALEYFRKKCTDGLVRTLRDVVNSPYAPEYD--IAGITD 246

Query: 233 NWVLIKVLKIFAKLAPLEPRLAKRVVEPICDIMRRT-----GAKSLMFECIRTVATSFTD 287
            ++ I++L++   L   +   +  + + +  +  +T        ++++EC+ T+  S  D
Sbjct: 247 PFLHIRLLRLLRMLGQGDADASDAMNDILAQVATKTESNKNAGNAILYECVETI-MSIED 305

Query: 288 YESAVELAVAKNGEFLTDDDPNLKYLGLHVLSIIAPKHLWAVLQNKEVVIMSLSDADPNI 347
                 LA+   G FL++ D N++Y+ L++L         AV +++  ++  + D+D +I
Sbjct: 306 NGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDAQAVQRHRATILECVKDSDASI 365

Query: 348 KLESLRLVMAMVSESNVVEFCRVLVNYSLKSDPEFCNEILGSILSRCRQNFYEIIVDFDW 407
           +  +L LV  +V+ESNV    + L+ Y   SD EF  ++   I S   +   E I   D 
Sbjct: 366 RKRALELVYLLVNESNVKPLTKELIEYLEVSDQEFKGDLTAKICSIVEKFSPEKIWYIDQ 425

Query: 408 YVSLLGEISRIPHCQKGEEIENQLIDIGMRVKDVRLPLVHVGRDLLIDPALLGNPFLHRI 467
            + +L E          +E+ + LI +     D+   +V       +  A   +     +
Sbjct: 426 MLKVLTEAGNFVK----DEVWHALIVVISNASDLHGYVVRA-----LYKAFQASAEQEIL 476

Query: 468 LSAAAWVCGEYVKFSKNPVELVE 490
           +  A W  GEY     N V +++
Sbjct: 477 VRVAVWCIGEYGDLLVNNVGVLD 499


>29827.m002653 AP-1 complex subunit gamma-2, putative
          Length = 981

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 122/498 (24%), Positives = 214/498 (42%), Gaps = 50/498 (10%)

Query: 17  DIIK--GLRHQQTGESAFISKVMEEIRREIKSTDLHTKSIALH--KLTYLNSIHFIDISW 72
           D++K  G    +  E   +   +E +++ I   D+  + +  +  +L Y+  +   D S+
Sbjct: 27  DLVKSIGEARSKAEEDRIVLSEIETLKKRIVEPDIPKRKMKEYIIRLVYVEMLGH-DASF 85

Query: 73  AAFHAIECISSPNFSHKKIGYLAISQSFNESTPVILLITNQLRKDLRSNNEFEVSLALEC 132
              HA++     N   K+ GYLA++   NE   +I+LI N ++KDL+S+N   V  AL  
Sbjct: 86  GYIHAVKMTHDDNLLLKRTGYLAVTLFLNEDHDLIILIVNTIQKDLKSDNYLVVCAALNA 145

Query: 133 LSTIGTVDLCRDLTPEVFTLMSSSKLLVRKKALGVILRVFGKYPDAVRVCFKRLVECLDG 192
           +  +   +    + P+V  L+  SK  VRKKA+  + R + K P +V        + L  
Sbjct: 146 VCKLINEETIPAVLPQVVELLGHSKEAVRKKAIMALHRFYHKSPSSVSHLVSNFRKRLCD 205

Query: 193 TDQQIASAVIGVFCELASKDPRSYLPLAPEFYRVL--VDSRN------------NWVLIK 238
            D  +  A +    +L + D  SY  L   F  +L  V  R              ++ IK
Sbjct: 206 NDPGVMGATLCPLFDLITVDVNSYKELVVSFVSILKQVAERRLPKSYDYHQMPAPFIQIK 265

Query: 239 VLKIFAKLAPLEPRLAKRVVEPICDIMRRTGAKS-----LMFECIRTVATSFTDYESAVE 293
           +LKI A L   + + ++ +   + DI+R+  + S     +++E I  V +S       +E
Sbjct: 266 LLKIMALLGSGDKQASEHMYTVVGDILRKCDSSSNIGNAVLYESICCV-SSIHPNPKLLE 324

Query: 294 LAVAKNGEFLTDDDPNLKYLGLHVLSIIAPKHLWAVLQNKEVVIMSLSDADPNIKLESLR 353
            A      FL  D  NLKY+G+  L  +         Q++  VI  L D D  +K ++  
Sbjct: 325 AAADVIARFLKSDSHNLKYMGIDALGRLIKLSPDIAEQHQLAVIDCLEDPDDTLKRKTFE 384

Query: 354 LVMAMVSESNVVEFCRVLVNYSLK-SDPEFCNEILGSILSRCRQNFYEIIVDFDWYVSLL 412
           L+  M   SNV      +++Y +  +D  +  E    I SRC +   +      W++  +
Sbjct: 385 LLYKMTKSSNVEVIVDRMIDYMININDSHYKTE----IASRCVELAEQFAPSNHWFIQTM 440

Query: 413 GEISRIPHCQKGEEIENQLIDIGMRV-----------KDVRLPLVHVGRDLLIDPALLGN 461
             +        G+ +++++    MR+            D +L    V   L I    +G+
Sbjct: 441 NRVFE----HAGDLVKSKVAHNLMRLIAEGFGEDDDNADSQLRSSAVESYLHI----IGD 492

Query: 462 PFLHRI-LSAAAWVCGEY 478
           P L  + L    WV GEY
Sbjct: 493 PKLPSVFLQVICWVLGEY 510


>29991.m000630 AP-2 complex subunit alpha, putative
          Length = 1018

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 195/442 (44%), Gaps = 47/442 (10%)

Query: 13  RTLDDIIKGLRH--QQTGESAFISKVMEEIRREIKSTDLHT---KSIALHKLTYLNSIHF 67
           R L   I  +R+   +  E   + K +  IR   K+    T   K   + K+ Y+  + +
Sbjct: 7   RGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLTPYEKKKYVWKMLYIYMLGY 66

Query: 68  IDISWAAFHAIECISSPNFSHKKIGYLAISQSFNESTPVILLITNQLRKDLRSNNEFEVS 127
            D+ +    A+  IS+P +  K++GY+  S   NE+   + L  N +R D+   NE    
Sbjct: 67  -DVDFGHMEAVSLISAPKYPEKQVGYIVTSCLLNENHDFLRLAINTVRNDIIGRNETFQC 125

Query: 128 LALECLSTIGTVDLCRDLTPEVFTLM--SSSKLLVRKKALGVILRVFGKYPDAVRV--CF 183
           LAL  +  IG  +    L  +V  L+  SS + LVRKKA   +LR++ K PD V V    
Sbjct: 126 LALTMVGNIGGREFAESLAADVQKLLISSSCRPLVRKKAALCLLRLYRKNPDVVNVDGWA 185

Query: 184 KRLVECLDGTDQQIASAVIGVFCELASKDPRSYLPLAPEFYRVLVD-SRNN--------- 233
            R+ + LD  D  + ++ + +   L S +  +Y    P+  + L   +RN          
Sbjct: 186 DRMAQLLDERDLGVLTSSMSLLVALVSNNHEAYWSCLPKCVKTLERLARNQDIPQEYTYY 245

Query: 234 -----WVLIKVLKIFAKLAPLE-PRLAKRVVEPICDIMRRT----------GAKSLMFEC 277
                W+ +K ++       +E P   + + E +  I+  T           A +++FE 
Sbjct: 246 GIPSPWLQVKTMRALQYFPTIEDPNTRRSLFEVLQRILMGTDVVKNVNKNNAAHAVLFEA 305

Query: 278 IRTVATSFTDYESAVELAVAKNGEFLTDDDPNLKYLGLHVLS-IIAPKHLWAVLQNKEV- 335
           +  V     + E   +  VA  G+F+   +PN++YLGL  ++ ++    +  +++  +  
Sbjct: 306 LALVMHLDAEKEMMSQ-CVALLGKFIAVREPNIRYLGLENMTRMLMVTDVQDIIKRHQAQ 364

Query: 336 VIMSLSDADPNIKLESLRLVMAMVSESNVVEFCRVLVNYSLKSDPEFCNE--ILGSILSR 393
           +I SL D D +I+  +L L+  M   SN  +    L+ Y   +D     E  +  +IL+ 
Sbjct: 365 IITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAAILAE 424

Query: 394 CRQNFYEIIVDFDWYVSLLGEI 415
                 +   D  WYV ++ ++
Sbjct: 425 ------KFAPDLSWYVDVILQL 440