Jatropha Genome Database

Jcr4S05943.60
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jcr4S05943.60
         (885 letters)

Database: JAT_unigene 
           122,497 sequences; 49,272,789 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EST_GW878931                                                          283   1e-75
contig08333  length=2151  numreads=99  gene=isogroup03242  statu...    54   2e-06

>EST_GW878931
          Length = 663

 Score =  283 bits (143), Expect = 1e-75
 Identities = 149/151 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcagataaagagctgctatggagagcatcaatggtggctcgtgttagtgaatttcca 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 513 atggcagataaagagctgctatggagagcatcaatggtggctcgcgttagtgaatttcca 572

                                                                       
Query: 61  tttaaactcacaccaaaggttgcgttcttgttcttgacaaaaggatctttgcctctggct 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 573 tttaaactcacaccaaaggttgcgttcttgttcttgacaaaaggatttttgcctctggct 632

                                          
Query: 121 cctctgtgggaattgttctttaaagggcatg 151
           |||||||||||||||||||||||||||||||
Sbjct: 633 cctctgtgggaattgttctttaaagggcatg 663


>contig08333  length=2151  numreads=99  gene=isogroup03242
            status=isotig
          Length = 2151

 Score = 54.0 bits (27), Expect = 2e-06
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                   
Query: 110  tgcctctggctcctctgtgggaattgttctttaaagggcatgaagggctttattc 164
            |||||||||| ||||| ||||||  |||||| | ||||||||||||||| |||||
Sbjct: 1131 tgcctctggcacctctttgggaaaggttcttgagagggcatgaagggctgtattc 1185