Jatropha Genome Database

Jcr4S05943.40
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S05943.40
         (228 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008322001 assembled CDS                                       215   1e-56
GSVIVT01008323001 assembled CDS                                       215   2e-56
GSVIVT01008324001 assembled CDS                                       209   6e-55
GSVIVT01029152001 assembled CDS                                       136   1e-32
GSVIVT01003207001 assembled CDS                                       129   8e-31
GSVIVT01003722001 assembled CDS                                       112   1e-25
GSVIVT01007816001 assembled CDS                                       108   2e-24
GSVIVT01031210001 assembled CDS                                       107   3e-24
GSVIVT01003724001 assembled CDS                                       105   2e-23

>GSVIVT01008322001 assembled CDS
          Length = 470

 Score =  215 bits (548), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/183 (59%), Positives = 138/183 (75%), Gaps = 7/183 (3%)

Query: 1   MLEDEVWRLEKIGKDGAFHKKLNSDGINTVQDFLKLSIVDSQKLRRILGAGMSEKIWEAT 60
           ML+DEVWRLEKIGKDGAFHKKL S  +N+VQDFLKLSIVD  KL+ ILG GMS+++WE+T
Sbjct: 245 MLDDEVWRLEKIGKDGAFHKKLASINVNSVQDFLKLSIVDPAKLKNILGVGMSDRMWEST 304

Query: 61  IKHARTCELGNKHYIFRGQNCTVTLNPICQVVNAIIDGHTYST-RDLPTINRGYIASLVR 119
           IKHARTC +GNK YI+RG + T+TLNPIC VV   I+G TY+T ++L +I R Y+  LVR
Sbjct: 305 IKHARTCMIGNKLYIYRGSHFTMTLNPICTVVKVKINGQTYATPQELSSI-RTYLEELVR 363

Query: 120 QAYANWNSLQEIVGVSSEMALLTLGEQAVNEYPSHHLQAMIKPIHEIGYSSDDR----YT 175
           QAYANW+SL+ +  V +E ALLT GEQ V +YP+H +   I P  ++G  +D      YT
Sbjct: 364 QAYANWDSLEVVDEVLNETALLTQGEQIVEQYPNHEVTMAI-PFQQLGNPADTSMGVGYT 422

Query: 176 DMG 178
           D+G
Sbjct: 423 DVG 425


>GSVIVT01008323001 assembled CDS
          Length = 469

 Score =  215 bits (547), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 119/239 (49%), Positives = 156/239 (65%), Gaps = 34/239 (14%)

Query: 1   MLEDEVWRLEKIGKDGAFHKKLNSDGINTVQDFLKLSIVDSQKLRRILGAGMSEKIWEAT 60
           ML D+VWRLE I KDGAFHK+L    INTVQ+FLKL IVD  KLRRILGAGMS+K WEA 
Sbjct: 249 MLNDDVWRLENISKDGAFHKRLAFKHINTVQEFLKLFIVDPAKLRRILGAGMSDKKWEAV 308

Query: 61  IKHARTCELGNKHYIFRGQNCTVTLNPICQVVNAIIDGHTYS-TRDLPTINRGYIASLVR 119
           IKHA TC +GNK +IF G + TVTLNPICQ+V A+I+G  Y+  ++L +IN+ Y+ SLVR
Sbjct: 309 IKHASTCLMGNKVHIFHGPHYTVTLNPICQLVRAVINGQIYANNQELSSINQAYVKSLVR 368

Query: 120 QAYANWNSLQEIVGVSSEMALLTLGEQAVNEYPSHHLQAMIKPIHEIGY----SSDDRYT 175
           +AY NWNSL+E+  + SE ALLT G+    + P+HH Q M +P  ++GY    ++D  Y+
Sbjct: 369 EAYINWNSLEEVDELLSETALLTQGDPR-EQCPNHH-QTMERPFQQLGYLPDKATDIIYS 426

Query: 176 DMGTQLNTSSTANMMGYNNWHNMAAPISPT---------IGYSISESSSDGELTPRSYI 225
           D+G+             +NW     P +PT         IGY I +S+ DG+L P  + 
Sbjct: 427 DVGS-------------SNW-----PTNPTYHGTLIDSGIGYYIMDSTVDGDLEPSKHF 467


>GSVIVT01008324001 assembled CDS
          Length = 469

 Score =  209 bits (533), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 115/228 (50%), Positives = 144/228 (63%), Gaps = 14/228 (6%)

Query: 1   MLEDEVWRLEKIGKDGAFHKKLNSDGINTVQDFLKLSIVDSQKLRRILGAGMSEKIWEAT 60
           ML DEVWRLEKIGKDGAFHKKL S+ INTVQD LKLSIVD QKLR ILG GMSEK+WE  
Sbjct: 245 MLNDEVWRLEKIGKDGAFHKKLASENINTVQDLLKLSIVDPQKLRTILGPGMSEKMWEVV 304

Query: 61  IKHARTCELGNKHYIFRGQNCTVTLNPICQVVNAIIDGHTYSTRDLPTINRGYIASLVRQ 120
           IKHAR C+LG   YI RG N TVTLN ICQ+V   I+G  Y+ ++L  ++R Y+   V Q
Sbjct: 305 IKHARNCDLGKNLYILRGYNFTVTLNAICQIVMMDINGQIYARQELSNLDRTYVEKFVIQ 364

Query: 121 AYANWNSLQEIVGVSSEMALLTLGEQAVNEYPSHHLQAMIKPIHEIG-YSSDDRYTDMGT 179
           AY+NWNSL+E+ G  +E ALLT GE    ++P+        P+   G Y +D    ++G 
Sbjct: 365 AYSNWNSLEEVDGSLNETALLTRGELG-EQHPNLQETMARAPLQPHGCYLTDKSSMEVGN 423

Query: 180 QLNTSSTANMMGYNNWHNMAA----PISPTIGYSISESSSDGELTPRS 223
                     +G +NW   AA    P+   + Y ++ESSS   +TP S
Sbjct: 424 A--------DVGSSNWQMNAAYQGTPVDTGVRYYLTESSSGCNITPPS 463


>GSVIVT01029152001 assembled CDS
          Length = 628

 Score =  136 bits (342), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/153 (44%), Positives = 96/153 (62%), Gaps = 3/153 (1%)

Query: 2   LEDEVWRLEKIGKDGAFHKKLNSDGINTVQDFLKLSIVDSQKLRRILGAGMSEKIWEATI 61
           L D+VWRLEKIGKDG+FHK+LN+  I TV+DFL+L + DSQKLR ILG+GMS K+WEA I
Sbjct: 244 LTDDVWRLEKIGKDGSFHKRLNNSHIYTVEDFLRLVVRDSQKLRSILGSGMSNKMWEALI 303

Query: 62  KHARTCELGNKHYIFRG---QNCTVTLNPICQVVNAIIDGHTYSTRDLPTINRGYIASLV 118
           +HA+TC +  K Y++     +N  V  N I ++   I     +S   L    + Y+ +LV
Sbjct: 304 EHAKTCTMSGKFYVYYSDDTRNVGVIFNNIYELSGLIAGEQYFSADSLSESQKVYVDNLV 363

Query: 119 RQAYANWNSLQEIVGVSSEMALLTLGEQAVNEY 151
           ++AY NWN ++E  G S     +     + NE+
Sbjct: 364 KKAYENWNQVEEYDGKSLSFKQIIRSSTSRNEH 396


>GSVIVT01003207001 assembled CDS
          Length = 636

 Score =  129 bits (325), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/137 (46%), Positives = 89/137 (64%), Gaps = 3/137 (2%)

Query: 2   LEDEVWRLEKIGKDGAFHKKLNSDGINTVQDFLKLSIVDSQKLRRILGAGMSEKIWEATI 61
           L DEVWRLEKIGKDG+FHK+LN  GI TV+DFL+L + DSQ+LR ILG+GMS K+W+  +
Sbjct: 257 LNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDSQRLRNILGSGMSNKMWDVLV 316

Query: 62  KHARTCELGNKHYIFRGQNCT---VTLNPICQVVNAIIDGHTYSTRDLPTINRGYIASLV 118
           +HA+TC L  K Y++   +     V  N I ++   I  G  +S   L    + ++ +LV
Sbjct: 317 EHAKTCVLSGKLYVYYPDDVRSVGVVFNNIYELSGLIAGGQYHSADSLTDNQKVFVDTLV 376

Query: 119 RQAYANWNSLQEIVGVS 135
           ++AY NW S+ E  G S
Sbjct: 377 KKAYDNWISVVEYDGKS 393


>GSVIVT01003722001 assembled CDS
          Length = 503

 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/135 (42%), Positives = 79/135 (58%), Gaps = 3/135 (2%)

Query: 2   LEDEVWRLEKIGKDGAFHKKLNSDGINTVQDFLKLSIVDSQKLRRILGAGMSEKIWEATI 61
           L DEVWRL++I KDGA HKKL    I TV+DFL+  + D QKLR ILG+GMS ++WE T+
Sbjct: 188 LHDEVWRLDRIAKDGALHKKLVKAAIVTVEDFLRFLVRDPQKLRNILGSGMSNRMWENTV 247

Query: 62  KHARTCELGNKHYIF---RGQNCTVTLNPICQVVNAIIDGHTYSTRDLPTINRGYIASLV 118
           +HA+TC LG K Y++      +     N I ++   I D        L    +    SLV
Sbjct: 248 EHAKTCVLGGKVYVYFTDETHSTGAVFNNIYELRGLIADEQFLPLESLTHNQKISTDSLV 307

Query: 119 RQAYANWNSLQEIVG 133
           ++AY NW+ + E  G
Sbjct: 308 KRAYENWSQVVEYDG 322


>GSVIVT01007816001 assembled CDS
          Length = 392

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/143 (39%), Positives = 82/143 (57%), Gaps = 7/143 (4%)

Query: 2   LEDEVWRLEKIGKDGAFHKKLNSDGINTVQDFLKLSIVDSQKLRRILGAGMSEKIWEATI 61
           L DEVWRLEKIGKDGAFHK+L+ + I TV+DFL L  +DS +LR ILG GMS K+WE T+
Sbjct: 249 LMDEVWRLEKIGKDGAFHKRLSRESITTVKDFLTLLYLDSPRLRNILGTGMSTKMWEVTV 308

Query: 62  KHARTCELGNKHYIF----RGQNCTVTLNPICQVVNAIIDGHTYSTRDLPTINRGYIASL 117
           +HARTC +  + +++      Q   V  N + Q++  + +        L    +    +L
Sbjct: 309 EHARTCVIDKRIFMYCPPGPQQKSGVVFNTVGQLMGLLSECQYIPIDKLSETEKVDAHNL 368

Query: 118 VRQAYANWNSLQEIVGVSSEMAL 140
           +  A+  W    E+V    E +L
Sbjct: 369 IGTAFKRWG---EVVSFEDESSL 388


>GSVIVT01031210001 assembled CDS
          Length = 589

 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 82/131 (62%), Gaps = 3/131 (2%)

Query: 2   LEDEVWRLEKIGKDGAFHKKLNSDGINTVQDFLKLSIVDSQKLRRILGAGMSEKIWEATI 61
           L+D+VWRLE+I KDGA HK+L+S GI+ V+DFL+L + D   LR++LG G+S KIWE  I
Sbjct: 257 LDDKVWRLERIAKDGASHKRLDSHGIHNVKDFLRLYVTDQSSLRKLLGNGISNKIWEIII 316

Query: 62  KHARTCELGNKHYIFR--GQNCTVTLNPICQVVNAIIDGHTYSTRDLPTINRGYI-ASLV 118
           +HA T     + Y++   G++  V L+ I ++V    D H+Y   D  T+   ++   L 
Sbjct: 317 EHANTYVGDEELYVYSRAGESLGVVLSSIYKIVGLTFDSHSYQAVDKLTMQEKFLMEDLK 376

Query: 119 RQAYANWNSLQ 129
           R AY N N ++
Sbjct: 377 RHAYKNVNDIK 387


>GSVIVT01003724001 assembled CDS
          Length = 381

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/126 (43%), Positives = 74/126 (58%), Gaps = 3/126 (2%)

Query: 2   LEDEVWRLEKIGKDGAFHKKLNSDGINTVQDFLKLSIVDSQKLRRILGAGMSEKIWEATI 61
           L DEVWRL++I KDGA HKKL    I TV+DFL+  + D QKLR ILG+GMS ++WE T+
Sbjct: 256 LHDEVWRLDRIAKDGALHKKLVKAAIVTVEDFLRFLVRDPQKLRNILGSGMSNRMWENTV 315

Query: 62  KHARTCELGNKHYIF---RGQNCTVTLNPICQVVNAIIDGHTYSTRDLPTINRGYIASLV 118
           +HA+TC LG K Y++      +     N I ++   I D        L    +    SLV
Sbjct: 316 EHAKTCVLGGKVYVYFTDETHSTGAVFNNIYELRGLIADEQFLPLESLTHNQKISTDSLV 375

Query: 119 RQAYAN 124
           ++AY N
Sbjct: 376 KRAYEN 381