Jatropha Genome Database

Jcr4S05837.20
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S05837.20
         (157 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008308001 assembled CDS                                       152   5e-38
GSVIVT01031014001 assembled CDS                                       144   2e-35

>GSVIVT01008308001 assembled CDS
          Length = 462

 Score =  152 bits (385), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 72/94 (76%), Positives = 76/94 (80%)

Query: 4   NWELKNCCNHEQXXXXXXXXXXXXXILALWRTVLLTPFKLVTVFLHEASHAIACKLTCGH 63
           NWELK CCNHEQ             ILALWRT+LLTPFKLVTVFLHEASHAIACKLTCGH
Sbjct: 232 NWELKKCCNHEQVVFLTTISICTVVILALWRTILLTPFKLVTVFLHEASHAIACKLTCGH 291

Query: 64  VEGIQVHADEGGTTQTRGGVYWFILPAGCVMNSL 97
           VEGIQVHADEGGTTQTRGG+YW ILPAG + +S 
Sbjct: 292 VEGIQVHADEGGTTQTRGGIYWLILPAGYLGSSF 325



 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 60/82 (73%), Gaps = 2/82 (2%)

Query: 76  TTQTRGGVYWFILPAGCVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGMGWGM 135
           TT+ R  +  +I+    VMNSLFSVYDIYDDLISRRV+SSDAEKFAEVCPCPCNG+GWG+
Sbjct: 383 TTEIR--ILRYIILFIGVMNSLFSVYDIYDDLISRRVNSSDAEKFAEVCPCPCNGVGWGV 440

Query: 136 IWGFISXXXXXXXXXXXXVILS 157
           IWG IS            VILS
Sbjct: 441 IWGLISFLFLCGAMYLGLVILS 462


>GSVIVT01031014001 assembled CDS
          Length = 233

 Score =  144 bits (363), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 70/114 (61%), Positives = 82/114 (71%), Gaps = 2/114 (1%)

Query: 3   PNWELKNCCNHEQXXXXXXXXXXXXXILALWRTVLLTPFKLVTVFLHEASHAIACKLTCG 62
            NWELKNCC H+Q             IL LWRT LLTPFKL+TVFLHEASHAIACKLTCG
Sbjct: 2   ANWELKNCCKHDQVVFLATIGVFTVVILLLWRTFLLTPFKLITVFLHEASHAIACKLTCG 61

Query: 63  HVEGIQVHADEGGTTQTRGGVYWFILPAGCVMNSLFSVYDIY--DDLISRRVHS 114
            VEGIQV+ADEGG TQTRGGVYW ILPAG + +S + +  I    +L++ R+ +
Sbjct: 62  QVEGIQVNADEGGVTQTRGGVYWLILPAGYLGSSFWGMVFILASTNLLTSRIAA 115



 Score =  108 bits (271), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 62/82 (75%), Gaps = 2/82 (2%)

Query: 76  TTQTRGGVYWFILPAGCVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGMGWGM 135
           TT+ R  + +FIL  G VMNSLFSVYDIYDDLISRRVHSSDAEKFAE+CPCPCNG+GWG+
Sbjct: 154 TTKVRI-LRFFILFMG-VMNSLFSVYDIYDDLISRRVHSSDAEKFAEICPCPCNGVGWGV 211

Query: 136 IWGFISXXXXXXXXXXXXVILS 157
           IWG IS            VILS
Sbjct: 212 IWGMISFIFLAAAMYLGLVILS 233