Jatropha Genome Database

Jcr4S05837.20
Show Alignment:  
BLASTN 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Jcr4S05837.20
         (474 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29996.m000135 conserved hypothetical protein                          321   2e-87
29914.m000203 conserved hypothetical protein                          135   3e-31

>29996.m000135 conserved hypothetical protein
          Length = 447

 Score =  321 bits (162), Expect = 2e-87
 Identities = 246/274 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaggccaaattgggagctgaagaattgctgcaaccatgaacaagtagtgtttctcgtc 60
           ||||||||||| ||||||||||| || ||||| |||||||| ||||| |||||||| |||
Sbjct: 1   atgaggccaaactgggagctgaacaaatgctgtaaccatgagcaagttgtgtttcttgtc 60

                                                                       
Query: 61  actgtctctgtctgcactgttgtcattcttgcgttatggagaacagtactgctgacacca 120
           ||||| |||||||||| |||||| |||||||||||||||||||||||| |||| ||||||
Sbjct: 61  actgtatctgtctgcagtgttgttattcttgcgttatggagaacagtattgctaacacca 120

                                                                       
Query: 121 ttcaagcttgtgaccgtgttccttcatgaagcaagccatgccattgcctgtaaattaact 180
           |||||||||||||| || ||||||||||| || |||||||| ||||| |||||| |||||
Sbjct: 121 ttcaagcttgtgactgtattccttcatgaggcgagccatgctattgcttgtaaactaact 180

                                                                       
Query: 181 tgtggacatgtggaagggattcaggttcatgcagatgaaggaggaactactcaaacacgt 240
           ||||| ||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||||| 
Sbjct: 181 tgtggtcatgtggaaggtattcaggttcacgcagatgaaggtggaaccactcagacacgc 240

                                             
Query: 241 ggtggtgtatactggtttatcttgccagctggat 274
           ||||| || |||||||||||||||||||||||||
Sbjct: 241 ggtggcgtgtactggtttatcttgccagctggat 274


>29914.m000203 conserved hypothetical protein
          Length = 666

 Score =  135 bits (68), Expect = 3e-31
 Identities = 116/132 (87%)
 Strand = Plus / Plus

                                                                       
Query: 280 atgaacagcttgttttctgtttatgatatttatgatgatctgatatctcgtagagttcat 339
           ||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||| 
Sbjct: 508 atgaacagcttgttttcagtttatgatatttatgatgacctaatatctcgaagagttcac 567

                                                                       
Query: 340 tctagtgatgctgagaaatttgcagaagtctgcccttgtccatgtaatggcatggggtgg 399
           ||||||||||||||||| || |||||| | ||||||||||| |||| |||| | || |||
Sbjct: 568 tctagtgatgctgagaagttcgcagaactttgcccttgtccttgtactggcgttggttgg 627

                       
Query: 400 ggcatgatttgg 411
           ||  ||||||||
Sbjct: 628 ggagtgatttgg 639



 Score = 60.0 bits (30), Expect = 1e-08
 Identities = 105/130 (80%)
 Strand = Plus / Plus

                                                                       
Query: 145 catgaagcaagccatgccattgcctgtaaattaacttgtggacatgtggaagggattcag 204
           ||||||||||| |||||  |||| || ||| | || |||||  |||| ||||| ||||||
Sbjct: 142 catgaagcaagtcatgcagttgcttgcaaacttacatgtggtgatgtagaaggaattcag 201

                                                                       
Query: 205 gttcatgcagatgaaggaggaactactcaaacacgtggtggtgtatactggtttatcttg 264
           ||||||||| ||||||| ||    || ||||||||||||||| | || ||| | ||||||
Sbjct: 202 gttcatgcaaatgaaggtggggtgacacaaacacgtggtggtatctattgggtgatcttg 261

                     
Query: 265 ccagctggat 274
           || |||||||
Sbjct: 262 cctgctggat 271