Jatropha Genome Database

Jcr4S05837.20
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S05837.20
         (157 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67060.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   134   3e-32

>AT1G67060.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 283 Blast hits to 281 proteins in 136
           species: Archae - 0; Bacteria - 145; Metazoa - 0; Fungi
           - 65; Plants - 41; Viruses - 0; Other Eukaryotes - 32
           (source: NCBI BLink). | chr1:25036729-25039123 FORWARD
           LENGTH=234
          Length = 234

 Score =  134 bits (336), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 82/115 (71%), Gaps = 2/115 (1%)

Query: 3   PNWELKNCCNHEQXXXXXXXXXXXXXILALWRTVLLTPFKLVTVFLHEASHAIACKLTCG 62
           PNWEL+ CCN  Q             IL LWRT LLTPFKL+TVFLHEASHA+ACKLTCG
Sbjct: 4   PNWELRGCCNRNQNTFLITIGVFTVVILLLWRTFLLTPFKLITVFLHEASHAVACKLTCG 63

Query: 63  HVEGIQVHADEGGTTQTRGGVYWFILPAGCVMNSLFSVYDIY--DDLISRRVHSS 115
            VEG++V+A+EGG+T TRGG+YW ILPAG + +S + +  I    +L++ R+ ++
Sbjct: 64  DVEGMEVNANEGGSTTTRGGIYWLILPAGYLGSSFWGMALILASTNLLTARIAAA 118



 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 49/65 (75%), Gaps = 1/65 (1%)

Query: 93  VMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGMGWGMIWGFISXXXXXXXXXXX 152
           VMNSLFSVYDIYDDLISRRVHSSDAEKFAE+CPC C G GWG+IWG IS           
Sbjct: 171 VMNSLFSVYDIYDDLISRRVHSSDAEKFAEICPC-CTGCGWGVIWGMISFAFLCASLYLG 229

Query: 153 XVILS 157
            VILS
Sbjct: 230 LVILS 234