Jatropha Genome Database

Jcr4S05837.20
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S05837.20
         (157 letters)

Database: Medicago_aa3.5 
           47,529 sequences; 14,043,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g082140.1 Unknown Protein (AHRD V1) chr07_pseudomolec...   141   1e-34
IMGA|Medtr7g082140.2 Unknown Protein (AHRD V1) chr07_pseudomolec...   141   2e-34

>IMGA|Medtr7g082140.1 Unknown Protein (AHRD V1)
          chr07_pseudomolecule_IMGAG_V3.5 23972538-23966686 E
          EGN_Mt100125 20100825
          Length = 247

 Score =  141 bits (356), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/95 (70%), Positives = 73/95 (76%)

Query: 3  PNWELKNCCNHEQXXXXXXXXXXXXXILALWRTVLLTPFKLVTVFLHEASHAIACKLTCG 62
          PNWELKNCC+H+Q             IL LWRT LLTPFKL+TVFLHEASHAIAC LTCG
Sbjct: 2  PNWELKNCCDHDQKLFIAFVGVYTVVILLLWRTFLLTPFKLITVFLHEASHAIACLLTCG 61

Query: 63 HVEGIQVHADEGGTTQTRGGVYWFILPAGCVMNSL 97
           VEGIQVHA+EGG TQTRGGVYW ILPAG + +S 
Sbjct: 62 KVEGIQVHANEGGVTQTRGGVYWLILPAGYLGSSF 96



 Score =  100 bits (250), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/49 (91%), Positives = 47/49 (95%)

Query: 93  VMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGMGWGMIWGFIS 141
           VMNSLFSVYDIYDDLISRRV+SSDAEKFAEVCPCPCNG GWG+IWG IS
Sbjct: 169 VMNSLFSVYDIYDDLISRRVNSSDAEKFAEVCPCPCNGFGWGVIWGMIS 217


>IMGA|Medtr7g082140.2 Unknown Protein (AHRD V1)
          chr07_pseudomolecule_IMGAG_V3.5 23972538-23966686 E
          EGN_Mt100125 20100825
          Length = 217

 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 67/95 (70%), Positives = 73/95 (76%)

Query: 3  PNWELKNCCNHEQXXXXXXXXXXXXXILALWRTVLLTPFKLVTVFLHEASHAIACKLTCG 62
          PNWELKNCC+H+Q             IL LWRT LLTPFKL+TVFLHEASHAIAC LTCG
Sbjct: 2  PNWELKNCCDHDQKLFIAFVGVYTVVILLLWRTFLLTPFKLITVFLHEASHAIACLLTCG 61

Query: 63 HVEGIQVHADEGGTTQTRGGVYWFILPAGCVMNSL 97
           VEGIQVHA+EGG TQTRGGVYW ILPAG + +S 
Sbjct: 62 KVEGIQVHANEGGVTQTRGGVYWLILPAGYLGSSF 96



 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/47 (89%), Positives = 44/47 (93%)

Query: 93  VMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGMGWGMIWGF 139
           VMNSLFSVYDIYDDLISRRV+SSDAEKFAEVCPCPCNG GWG+I  F
Sbjct: 169 VMNSLFSVYDIYDDLISRRVNSSDAEKFAEVCPCPCNGFGWGVICEF 215