Jatropha Genome Database

Jcr4S05837.20
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S05837.20
         (157 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma05g34690.1                                                       154   4e-38
Glyma08g48130.1                                                       139   8e-34
Glyma18g53360.1                                                       139   1e-33

>Glyma05g34690.1 
          Length = 234

 Score =  154 bits (389), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 75/116 (64%), Positives = 88/116 (75%), Gaps = 2/116 (1%)

Query: 1   MRPNWELKNCCNHEQXXXXXXXXXXXXXILALWRTVLLTPFKLVTVFLHEASHAIACKLT 60
           M+PNWELKNCCNH+Q             ILAL RTVLL PFKLVTVFLHEASHAIACKLT
Sbjct: 1   MKPNWELKNCCNHDQVVFLVTVAVCTVVILALRRTVLLRPFKLVTVFLHEASHAIACKLT 60

Query: 61  CGHVEGIQVHADEGGTTQTRGGVYWFILPAGCVMNSLFSVYDIY--DDLISRRVHS 114
           CGH+EGIQVHADEGGTTQTRGG+YW ILPAG + +S + +  I    +L++ R+ +
Sbjct: 61  CGHIEGIQVHADEGGTTQTRGGIYWLILPAGYLGSSFWGMVLILASTNLLTARIAA 116



 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 59/82 (71%), Gaps = 2/82 (2%)

Query: 76  TTQTRGGVYWFILPAGCVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGMGWGM 135
           TT+ R  +  +I+    VMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPC G+GWG+
Sbjct: 155 TTKVR--ILRYIILFIGVMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCTGVGWGV 212

Query: 136 IWGFISXXXXXXXXXXXXVILS 157
           IWG IS            VILS
Sbjct: 213 IWGLISFVFLCGAVYLGAVILS 234


>Glyma08g48130.1 
          Length = 234

 Score =  139 bits (351), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 66/101 (65%), Positives = 76/101 (75%)

Query: 3   PNWELKNCCNHEQXXXXXXXXXXXXXILALWRTVLLTPFKLVTVFLHEASHAIACKLTCG 62
           PNWEL+NCC+H+Q             IL LWRT LLTPFKL+TVFLHEASHAIAC LTCG
Sbjct: 2   PNWELRNCCDHDQKIFIACVAAFTVVILVLWRTFLLTPFKLITVFLHEASHAIACWLTCG 61

Query: 63  HVEGIQVHADEGGTTQTRGGVYWFILPAGCVMNSLFSVYDI 103
            VEGIQVHA+EGG TQTRGG+YW ILPAG + +S + +  I
Sbjct: 62  KVEGIQVHANEGGVTQTRGGIYWVILPAGYLGSSFWGMVLI 102



 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 51/65 (78%)

Query: 93  VMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGMGWGMIWGFISXXXXXXXXXXX 152
           VMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNG GWG+IWG IS           
Sbjct: 169 VMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGFGWGVIWGMISFAFLCASLYLG 228

Query: 153 XVILS 157
            VILS
Sbjct: 229 LVILS 233


>Glyma18g53360.1 
          Length = 234

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 70/89 (78%)

Query: 3  PNWELKNCCNHEQXXXXXXXXXXXXXILALWRTVLLTPFKLVTVFLHEASHAIACKLTCG 62
          PNWEL+NCC+H+Q             IL LWRT LLTPFKL+TVFLHEASHAIAC LTCG
Sbjct: 2  PNWELRNCCDHDQKVFIACVAAFTVVILVLWRTFLLTPFKLITVFLHEASHAIACWLTCG 61

Query: 63 HVEGIQVHADEGGTTQTRGGVYWFILPAG 91
           VEGIQVHA+EGG TQTRGG+YW ILPAG
Sbjct: 62 KVEGIQVHANEGGVTQTRGGIYWVILPAG 90



 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/65 (76%), Positives = 51/65 (78%)

Query: 93  VMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGMGWGMIWGFISXXXXXXXXXXX 152
           VMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNG GWG+IWG IS           
Sbjct: 169 VMNSLFSVYDIYDDLISRRVHSSDAEKFAEVCPCPCNGFGWGVIWGMISFAFLCASLYLG 228

Query: 153 XVILS 157
            VILS
Sbjct: 229 LVILS 233