Jatropha Genome Database

Jcr4S03834.30
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S03834.30
         (347 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01013180001 assembled CDS                                       508   e-144
GSVIVT01015822001 assembled CDS                                       367   e-102
GSVIVT01012742001 assembled CDS                                        74   1e-13

>GSVIVT01013180001 assembled CDS
          Length = 480

 Score =  508 bits (1307), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/345 (72%), Positives = 284/345 (82%), Gaps = 2/345 (0%)

Query: 3   NSPNLPDGVYVGSLLSDSNDKIAKIVSNFVDDFQCGDVFWSINGLGAPDLAVVYIPAGVR 62
           N   LP GV+VGSL S  ++ I K VS FV +F+ GD+FWS+NGLG PD+AVVY+PAG R
Sbjct: 138 NLSQLPTGVFVGSLSSLPSETITKKVSEFVANFE-GDLFWSLNGLGTPDMAVVYVPAGCR 196

Query: 63  VESPIHLRYVSLEGGEEGSNKLPVSNPRXXXXXXXXXXXXXXXXXXXXXSDDKCYWANSV 122
           VE P+H+ Y S+EGG+ GS KLPVSNPR                      ++KCYWAN+V
Sbjct: 197 VEMPLHIVYYSVEGGDIGSKKLPVSNPRVFVLVEEGGEIGVIEEYVGV-GENKCYWANTV 255

Query: 123 LQVIIEEGSKVKHSYIQSQSLNSAHIKWTYVQQKSSSTYELVEVSTGGKLSRHNLHVQQL 182
            +V+I EG+KVKHSYIQSQSL++AHIKWT VQQ SSS+YEL+EVSTGGKLSRHN+++QQ+
Sbjct: 256 TEVVIGEGAKVKHSYIQSQSLSAAHIKWTSVQQGSSSSYELIEVSTGGKLSRHNVNIQQV 315

Query: 183 GPDTSTELSTFHLSVDGQTQDLHSRLVLDHPRAYSRQLHKCIVAHSLGQAVFDGNIKVNR 242
           GPDT TELS FHLSV  QTQDLHSRLVLDHPR YSRQLHKCIVAHSLGQAVFDGNIKVNR
Sbjct: 316 GPDTVTELSAFHLSVGDQTQDLHSRLVLDHPRGYSRQLHKCIVAHSLGQAVFDGNIKVNR 375

Query: 243 YAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGID 302
           YAQ+TDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEE+QLFYF ARGID
Sbjct: 376 YAQRTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEENQLFYFLARGID 435

Query: 303 LETARKALVFSFGAEVIERCPYSFIRQQAERHVKELLTSSGQGSS 347
           LETARKAL+FSFG EVIER PYS IR++ E H+K LL  + +GSS
Sbjct: 436 LETARKALIFSFGGEVIERLPYSSIRKKVETHIKALLEPTLKGSS 480


>GSVIVT01015822001 assembled CDS
          Length = 279

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/210 (84%), Positives = 192/210 (91%)

Query: 130 GSKVKHSYIQSQSLNSAHIKWTYVQQKSSSTYELVEVSTGGKLSRHNLHVQQLGPDTSTE 189
           G+KVKHSYIQSQSL++AHIKWT VQQ SS +YEL+EVSTGGKLSRHN+++QQ+GPDT TE
Sbjct: 20  GAKVKHSYIQSQSLSAAHIKWTSVQQGSSGSYELIEVSTGGKLSRHNVNIQQVGPDTVTE 79

Query: 190 LSTFHLSVDGQTQDLHSRLVLDHPRAYSRQLHKCIVAHSLGQAVFDGNIKVNRYAQQTDA 249
           LS FHLSV   TQDLH+RLVLDHPR Y RQLHKCIVAHSLGQAVFDGNIKVNRYAQQTDA
Sbjct: 80  LSAFHLSVGDPTQDLHTRLVLDHPRGYFRQLHKCIVAHSLGQAVFDGNIKVNRYAQQTDA 139

Query: 250 GQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARGIDLETARKA 309
           GQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEE+QLFYF ARGIDLETARK 
Sbjct: 140 GQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEENQLFYFLARGIDLETARKT 199

Query: 310 LVFSFGAEVIERCPYSFIRQQAERHVKELL 339
           L+FSFG EVIER PYS IR++ E H+K LL
Sbjct: 200 LIFSFGDEVIERLPYSSIRKKVETHIKALL 229


>GSVIVT01012742001 assembled CDS
          Length = 511

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 97/214 (45%), Gaps = 9/214 (4%)

Query: 121 SVLQVIIEEGSKVKHSYIQSQSLNSAHIK---WTYVQQK-----SSSTYELVEVSTGGKL 172
           +V+++   EG+++K+S +Q+        +   + +V ++     + S     +V TG  +
Sbjct: 282 AVVELYCAEGAEIKYSTVQNWYAGDEEGRGGIYNFVTKRGLCSGARSKISWTQVETGSAI 341

Query: 173 SRHNLHVQQLGPDTSTELSTFHLSVDGQTQDLHSRLVLDHPRAYSRQLHKCIVAHSLGQA 232
           +     V   G DT  E  +  L+ + Q  D  ++++       SR + K I A +  + 
Sbjct: 342 TWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISAGN-SRN 400

Query: 233 VFDGNIKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQ 292
            + G ++V   A+         S+L+   A  N  P +Q+     +  H A+ S + E Q
Sbjct: 401 CYRGLVQVQSKAKNARNSSQCDSMLIGDNAAANTYPYIQVKNPTARIEHEASTSKIGEDQ 460

Query: 293 LFYFQARGIDLETARKALVFSFGAEVIERCPYSF 326
           LFYFQ RGID E A  A++  F  +V    P  F
Sbjct: 461 LFYFQQRGIDYEKAMAAMISGFCKDVFNELPDEF 494