Jatropha Genome Database

Jcr4S03834.30
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S03834.30
         (347 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28481.m000021 Protein sufD, putative                                  599   e-172
29842.m003610 Protein sufB, putative                                   71   9e-13

>28481.m000021 Protein sufD, putative
          Length = 484

 Score =  599 bits (1545), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 289/347 (83%), Positives = 309/347 (89%)

Query: 1   MLNSPNLPDGVYVGSLLSDSNDKIAKIVSNFVDDFQCGDVFWSINGLGAPDLAVVYIPAG 60
           M NS N PDGV+VGS+L+D  DKIAK+VS + DDFQ GD+FWSINGLGAPD+AV+Y+PAG
Sbjct: 138 MSNSLNFPDGVFVGSMLNDPEDKIAKLVSKYFDDFQWGDLFWSINGLGAPDVAVIYVPAG 197

Query: 61  VRVESPIHLRYVSLEGGEEGSNKLPVSNPRXXXXXXXXXXXXXXXXXXXXXSDDKCYWAN 120
           VRVE+PIHLRYVS+EGGEEGSNKLPVSNPR                     S DKCYWAN
Sbjct: 198 VRVENPIHLRYVSVEGGEEGSNKLPVSNPRVLVVVEEGGEVGIIEEFVSIGSGDKCYWAN 257

Query: 121 SVLQVIIEEGSKVKHSYIQSQSLNSAHIKWTYVQQKSSSTYELVEVSTGGKLSRHNLHVQ 180
           SVL+V+IEEG+KVKHSYIQSQSLNSAHIKWT VQQKSSSTYELVEVSTGGKLSRHNLHVQ
Sbjct: 258 SVLEVMIEEGAKVKHSYIQSQSLNSAHIKWTAVQQKSSSTYELVEVSTGGKLSRHNLHVQ 317

Query: 181 QLGPDTSTELSTFHLSVDGQTQDLHSRLVLDHPRAYSRQLHKCIVAHSLGQAVFDGNIKV 240
           QLGPDTSTELSTFHL V  QTQDLHSRLVLDHPRAYSRQLHKCIVAHSLGQAVFDGN+KV
Sbjct: 318 QLGPDTSTELSTFHLCVSSQTQDLHSRLVLDHPRAYSRQLHKCIVAHSLGQAVFDGNVKV 377

Query: 241 NRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARG 300
           NRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARG
Sbjct: 378 NRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQLFYFQARG 437

Query: 301 IDLETARKALVFSFGAEVIERCPYSFIRQQAERHVKELLTSSGQGSS 347
           IDLETARKALVFSFGAEVI+RCP+SFIR+Q ER VKELL+S+ Q SS
Sbjct: 438 IDLETARKALVFSFGAEVIDRCPFSFIRKQVERQVKELLSSASQESS 484


>29842.m003610 Protein sufB, putative
          Length = 553

 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 96/214 (44%), Gaps = 9/214 (4%)

Query: 121 SVLQVIIEEGSKVKHSYIQSQSLNSAHIK---WTYVQQKS-----SSTYELVEVSTGGKL 172
           +V+++   EG+++K+S +Q+        +   + +V ++       S     +V TG  +
Sbjct: 324 AVVELYCAEGAEIKYSTVQNWYAGDEEGRGGIYNFVTKRGLCSGDRSKISWTQVETGSAI 383

Query: 173 SRHNLHVQQLGPDTSTELSTFHLSVDGQTQDLHSRLVLDHPRAYSRQLHKCIVAHSLGQA 232
           +     V   G DT  E  +  L+ + Q  D  ++++       SR + K I A +  + 
Sbjct: 384 TWKYPSVVLEGDDTVGEFYSVALTNNYQQADTGTKMIHKGKNTRSRIISKGISAGN-SRN 442

Query: 233 VFDGNIKVNRYAQQTDAGQLTRSLLLEPRATVNVKPNLQIIADDVKCSHGAAISDLEESQ 292
            + G +++   A+         S+L+   A  N  P +Q+     +  H A+ S + E Q
Sbjct: 443 CYRGLVQIQSKAENARNLSQCDSMLIGDTAAANTYPYIQVKNPTARVEHEASTSKIGEDQ 502

Query: 293 LFYFQARGIDLETARKALVFSFGAEVIERCPYSF 326
           LFYFQ RGID E A  A++  F  +V    P  F
Sbjct: 503 LFYFQQRGIDYEKAMAAMISGFCQDVFNELPDEF 536