Jatropha Genome Database

Jcr4S00006.270
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S00006.270
         (262 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008315001 assembled CDS                                       115   3e-26
GSVIVT01022142001 assembled CDS                                        52   3e-07

>GSVIVT01008315001 assembled CDS
          Length = 233

 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/231 (37%), Positives = 115/231 (49%), Gaps = 69/231 (29%)

Query: 1   MCSETSPRISFSNDLAHGDGTENEHVPRRDTTL--LESNSDFEFNISSRLLDYESSLADE 58
           +CSETSPRISFSND    D    +H   R++ L  L+S+ DF+F +S+   ++ESS ADE
Sbjct: 5   ICSETSPRISFSNDFCQADVASIDHCKSRNSELSSLDSSPDFDFCVSTSF-EHESSSADE 63

Query: 59  LFSNGMLLPFQDNKQETSPNVSQNISRNVSRHVXXXXXXXXXXXXXXXXXXXXXXXXXXE 118
           LFSNG++LP +  ++  +P  SQ                                     
Sbjct: 64  LFSNGIILPIKIQERTVAPRSSQ------------------------------------- 86

Query: 119 IRVSNSELEEKAEPKSTFWGFKRSNSLNCD--LKKGSIFSLPVLSRSNSTGTAAPNSKRS 176
                    EK +   +FW FKRS+SLNCD   ++  + SLP+LSRSNSTG+   NSKR+
Sbjct: 87  ---------EKLQSSKSFWPFKRSSSLNCDNVHRRSLMCSLPLLSRSNSTGSVQ-NSKRT 136

Query: 177 S---------MAKKLLPSTSSGSSTNYVYTFPHXXXXXXXXKPPLKKKYGG 218
           S         MAK    S+S+ S+  Y Y  P         KPPLKK YGG
Sbjct: 137 SKQNSQKQPSMAKSSSSSSSASSTNFYTYPVPQ--------KPPLKKNYGG 179


>GSVIVT01022142001 assembled CDS
          Length = 171

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 11/73 (15%)

Query: 1  MCSETSPRISFSNDLAHGDGTENEHVPRRDTTLLES--NSDFEFNISSRLLDYESSLADE 58
          +C+  SPRISFSND       E++ + + + +  E+  +SDFEF+++    +Y    ADE
Sbjct: 14 LCAPMSPRISFSNDFV-----ESQQMIKHERSSREAPVSSDFEFSVT----NYSMMSADE 64

Query: 59 LFSNGMLLPFQDN 71
          LF  G LLPF+DN
Sbjct: 65 LFFKGRLLPFKDN 77