Jatropha Genome Database

Jcr4S00006.270
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S00006.270
         (262 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29996.m000132 conserved hypothetical protein                          203   6e-53
30066.m000717 conserved hypothetical protein                          125   1e-29
30115.m001186 conserved hypothetical protein                           49   2e-06

>29996.m000132 conserved hypothetical protein
          Length = 255

 Score =  203 bits (517), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 133/275 (48%), Positives = 165/275 (60%), Gaps = 33/275 (12%)

Query: 1   MCSETSPRISFSNDLAHGDGTENEHVPRRDTTLLESNSDFEFNISSRLLDYESSLADELF 60
           MCS+TSPRISFSNDL+  D    +   RRDTTLLES+ DFEF+I S +  Y SSLADELF
Sbjct: 1   MCSQTSPRISFSNDLSQDDDIPID---RRDTTLLESSCDFEFSICSSIDQY-SSLADELF 56

Query: 61  SNGMLLPFQDNKQETSPNVSQNISRNVSRHVXXXXXXXXXXXXXXXXXXXXXXXXXXEIR 120
           ++GM+LP +  +   SP        N   H                           EI 
Sbjct: 57  ADGMILPVRVPETGFSP-------PNNRVHRYDEVSPRVSSLPPLPCSSTNGGNSKKEIM 109

Query: 121 VSNSELEEKAEPKSTFWGFKRSNSLNCDLKKGSIFSLPVLSRSNSTGTA----------- 169
           V NSELEEK +   +FWGFKRS+SLNCD+KK S+ SLP+LSRSNSTG+            
Sbjct: 110 VLNSELEEKTQSSKSFWGFKRSSSLNCDIKK-SLCSLPLLSRSNSTGSVPNPKHKPTSCK 168

Query: 170 --APNSKRSSMAKKLLPSTSSGSSTNYVYTFPHXXXXXXXXKPPLKKKYGGVPNCNNGVK 227
             + N+ +  +++K   S  + S++ YVY  PH        KPPLKK YGG    NNG+K
Sbjct: 169 DLSKNNSQKQLSRKSSASPPASSASTYVYALPH--------KPPLKKHYGGSHGKNNGLK 220

Query: 228 ISPILNVPPPYIAKGAANLFGLGSLLRNGKEKNRK 262
            SP+LNVPPPYIAKGAANLFGLGS  RNGKE+++K
Sbjct: 221 FSPVLNVPPPYIAKGAANLFGLGSFFRNGKEESKK 255


>30066.m000717 conserved hypothetical protein
          Length = 267

 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/278 (38%), Positives = 134/278 (48%), Gaps = 32/278 (11%)

Query: 1   MCSETS-----PRISFSNDL--AHGDGTENEHVPRRDTTLLESNSDFEFNISSRLLDYES 53
           +CSE S     PRISFS+DL  A    +  +  PR D+ LL+S  DF+F   S  +  E 
Sbjct: 5   VCSEISSAGISPRISFSHDLNQATDSVSIQDCNPRLDSCLLDS--DFDFCTGSSFVQ-EL 61

Query: 54  SLADELFSNGMLLPFQDNKQETSPNVSQNISRNVSRHVXXXXXXXXXXXXXXXXXXXXXX 113
           S ADELFSNG +LP +  K        + +S +  R                        
Sbjct: 62  SSADELFSNGKILPIEIKK-------CKKLSVSTKR---TDQPKPITTHSLKSSTDTPEK 111

Query: 114 XXXXEIRVSNSELEEKAEPKSTFWGFKRSNSLNCD---LKKGSIFSLPVLSRSNSTGTAA 170
               E    + + +EK     +FW FKRSNSLNCD     KG I SL  LSRSNSTG+A 
Sbjct: 112 KLLKEFLSMSIDADEKPISTKSFWQFKRSNSLNCDSTTRSKGLIRSLQFLSRSNSTGSAP 171

Query: 171 PNSKRSSMAKK------LLPSTSSGSSTNYVYTFPHXXXXXXXXKPPLKKKYGGVPNCNN 224
              K SS+  K      L    S  +  +    F          K P  +K G      N
Sbjct: 172 NPPKLSSVCSKENQKPRLQKQHSVPTRKSPATNFGAFYGYNSGQKHPSLRKCGSY---GN 228

Query: 225 GVKISPILNVPPPYIAKGAANLFGLGSLLRNGKEKNRK 262
           GV+ISP+LN+PPPYI++G ANLFGLGSL  NGK K +K
Sbjct: 229 GVRISPVLNIPPPYISRGTANLFGLGSLFCNGKVKRKK 266


>30115.m001186 conserved hypothetical protein
          Length = 185

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 2  CSETSPRISFSNDLAHGDGTENEHVPRRDTTLLESNSDFEFNISSRLLDYESSLADELFS 61
          C   SPRISFSND A       +       +    ++DFEF+++    +Y    ADELF 
Sbjct: 16 CPPISPRISFSNDFADSQQIIKQERSSSSRSEAPVSTDFEFSVT----NYSMMSADELFF 71

Query: 62 NGMLLPFQDNKQETSPNVSQNISRN 86
           G LLPF+DN      N  Q   R+
Sbjct: 72 KGRLLPFKDNGNNNKSNQMQRTIRD 96