Jatropha Genome Database

Jcr4S00006.270
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S00006.270
         (262 letters)

Database: Medicago_aa3.5 
           47,529 sequences; 14,043,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g104290.1 Unknown Protein (AHRD V1) chr08_pseudomolec...   132   2e-31
IMGA|Medtr6g083930.1 Unknown Protein (AHRD V1) chr06_pseudomolec...   130   7e-31
IMGA|Medtr1g110410.1 Unknown Protein (AHRD V1); contains Interpr...    95   4e-20
IMGA|Medtr7g082180.1 At1g67050 (Fragment) (AHRD V1 *-*- B0FU30_A...    85   4e-17
IMGA|Medtr5g017580.1 Unknown Protein (AHRD V1) chr05_pseudomolec...    59   3e-09

>IMGA|Medtr8g104290.1 Unknown Protein (AHRD V1)
           chr08_pseudomolecule_IMGAG_V3.5 30715759-30714776 F
           EGN_Mt100125 20100825
          Length = 224

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/262 (40%), Positives = 143/262 (54%), Gaps = 45/262 (17%)

Query: 1   MCSETS-PRISFSNDLAHGDGTENEHVPRRDTTLLESNSDFEFNISSRLLDYESSLADEL 59
           MCS+TS PR SFSND++     +++ V  RDT LLESN+DFEF I+S+ +++ +S ADEL
Sbjct: 1   MCSQTSSPRFSFSNDVSP---MKHDVVSCRDTLLLESNTDFEF-ITSKNIEFGTSSADEL 56

Query: 60  FSNGMLLPFQ--DNKQETSPNVSQNISRNVSRHVXXXXXXXXXXXXXXXXXXXXXXXXXX 117
           FSNG++LP Q  D K  T+    Q    N+                              
Sbjct: 57  FSNGVILPLQIHDKKNNTASYKEQPRYMNLPPR-------------------PFSTKTKK 97

Query: 118 EIRVSNSELEEKAEPKSTFWGFKRSNSLNCDLKKGSIFSLPVLSRSNSTGTAAPNSKRSS 177
           EI   N E++E     S+F GFK+S SLNCD  K  +   P LSRSNSTG +APN KR+S
Sbjct: 98  EI---NKEVQETNTRSSSFIGFKKSKSLNCDTNKNFVCFSPPLSRSNSTG-SAPNLKRTS 153

Query: 178 MAKKLLPSTSSGSSTNYVYTFPHXXXXXXXXKPPLKKKYGGVPNCNNGVKISPILNVPPP 237
             ++    +SS S+ N +Y              P++K   G  +  NG++ SP+LNVP P
Sbjct: 154 SNRQQSSLSSSCSTLNNLY--------------PVQKSCSG-KSYGNGLRFSPVLNVPTP 198

Query: 238 YIAKGAANLFGLGSLLRNGKEK 259
             +KG+ +LFG GS LR GK K
Sbjct: 199 CFSKGSLSLFGFGSFLRVGKAK 220


>IMGA|Medtr6g083930.1 Unknown Protein (AHRD V1)
           chr06_pseudomolecule_IMGAG_V3.5 19434221-19432859 F
           EGN_Mt100125 20100825
          Length = 242

 Score =  130 bits (327), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 107/264 (40%), Positives = 141/264 (53%), Gaps = 25/264 (9%)

Query: 1   MCSETS--PRISFSNDLAHGDGTENEHVPRRDTTLLESNSDFEFNISSRLLDYESSLADE 58
           MCSETS  PR+SFS++L+  +    + V   +T LL+SNSDFEFN +S +L++ESS ADE
Sbjct: 1   MCSETSTPPRLSFSHNLS--EFQLQKDVTCIETLLLDSNSDFEFN-TSNILEFESSSADE 57

Query: 59  LFSNGMLLPFQDNKQETSPNVSQNISRNVSRHVXXXXXXXXXXXXXXXXXXXXXXXXXXE 118
           LFSNG +LP      + +P V  N ++   R                            E
Sbjct: 58  LFSNGKILP------KHTPFVKSNHTKFPPRPSASNVDKMKKESNPRWILAQSGTETVRE 111

Query: 119 IRVSNSELEEKAEPKSTFWGFKRSNSLNCDLKKGSIFSLPVLSRSNSTGTAAPNSKRSSM 178
           +   ++  E+K   KS FWGF RS SLNCD KK   FSLP L RSNSTG+A    K+ S 
Sbjct: 112 LLNVSTNNEKKHHSKS-FWGFSRSKSLNCDTKKNLSFSLPPLYRSNSTGSA----KKMSS 166

Query: 179 AKKLLPSTSSGSSTNYVYTFPHXXXXXXXXKPPLKKKYGGVPNCNNGVKISPILNVPPPY 238
            K+   +T+  SS + +  +P         K    K YGG  +  NG  ISP+LNVP P 
Sbjct: 167 NKQTSSATTKSSSWSNINLYP-------MQKSNSGKSYGG--SYGNGHWISPVLNVPTPC 217

Query: 239 IAKGAANLFGLGSLLRNGKEKNRK 262
           ++KG+AN F  GS L  GK K  K
Sbjct: 218 VSKGSANFFRFGSFLSIGKVKKNK 241


>IMGA|Medtr1g110410.1 Unknown Protein (AHRD V1); contains Interpro
           domain(s)  IPR012442  Protein of unknown function
           DUF1645 chr01_pseudomolecule_IMGAG_V3.5
           32551907-32550876 E EGN_Mt100125 20100825
          Length = 267

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/272 (34%), Positives = 134/272 (49%), Gaps = 38/272 (13%)

Query: 1   MCSET-----SPRISFSNDLAHGDGT---ENEHVPRRDTTLLESNSDFEFNISSRLLDYE 52
           +CSET     SPRISFS+DL + +G+   E+ H+ R D  LL+S SDF F+I++     +
Sbjct: 5   VCSETNSPGFSPRISFSHDLKNSNGSIPVEDLHL-RSDLHLLDSTSDFVFSITN-CFSQQ 62

Query: 53  SSLADELFSNGMLLPFQDNKQETSPNVSQNISRNVSRHVXXXXXXXXXXXXXXXXXXXXX 112
            S ADELFS+G ++P +         + + IS  +   V                     
Sbjct: 63  FSSADELFSDGKIVPME---------IKKVISNGII--VPMKKNSSANEFFEPLQKTTVM 111

Query: 113 XXXXXEIRVSNSELEEKAEPKST-FWGFKRSNSLNCDLKKGS--IFSLPVLSRSNSTGTA 169
                E     +++EE+    S  FW FKRS+SLN D  + +  I SL  LSRS+STG +
Sbjct: 112 KKRLKEFLSDETDVEEEKPLLSKHFWQFKRSSSLNFDTARQNRLIRSLQFLSRSHSTG-S 170

Query: 170 APNSKRSSMAK--------KLLPSTSSGSSTNYVYTFPHXXXXXXXXKPPLKKKYGGVPN 221
           APN K++ + K        K    +SS  S++   T           K  L+K      +
Sbjct: 171 APNPKQTELQKERQKQRLQKQSSVSSSRRSSSSSSTSSTYYFYNSSNKSSLRK-----CS 225

Query: 222 CNNGVKISPILNVPPPYIAKGAANLFGLGSLL 253
            +NGV+ISP+LN+P  YI K  AN FG GSL 
Sbjct: 226 SSNGVRISPVLNLPQAYIPKVTANFFGFGSLF 257


>IMGA|Medtr7g082180.1 At1g67050 (Fragment) (AHRD V1 *-*-
           B0FU30_ARATH) chr07_pseudomolecule_IMGAG_V3.5
           23989685-23991654 E EGN_Mt100125 20100825
          Length = 255

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/266 (34%), Positives = 129/266 (48%), Gaps = 43/266 (16%)

Query: 1   MCSE-TSPRISFSNDLAHGDGTENEHVP-RRDTTLLESNSDFEFNISSRLLDYESSLADE 58
           +CSE   PRISFS+D +  D    E  P R  ++ L S+ DF+FN+S  L   ESS A E
Sbjct: 5   LCSENCGPRISFSHDFSQSDFIPVEQHPIRSKSSGLNSSIDFDFNVSESLNLEESSSAAE 64

Query: 59  LFSNGMLLPFQDNKQET-----------SPNVSQNISRNVSRHVXXXXXXXXXXXXXXXX 107
           LFS+G +LP +  K++            SPN S N S +   +                 
Sbjct: 65  LFSDGRILPAEIKKKQVPLKQSLTTQSPSPNPSLNPSYSTCNN--------------ESN 110

Query: 108 XXXXXXXXXXEIRVSNSELEEKAEPKS-TFWGFKRSNSLNCDLKKG-SIFSLPVLSRSNS 165
                     E +  N E+ EK    S +FW FKRS+S  C    G S+  LP+LSRSNS
Sbjct: 111 GKNLRKESTKESKYLNDEVCEKQSSNSKSFWSFKRSSS--CGSGYGRSLCPLPLLSRSNS 168

Query: 166 TGTAAP--NSKRSSMAKKLLPSTSSGSSTNYVYTFPHXXXXXXXXKPPLKKKYGGVPNCN 223
           TG++    N+KR+S++K+ + +  S S         +        KPPL K YG      
Sbjct: 169 TGSSTSSVNNKRNSLSKEGISTVKSNSQKLSSTRLSNSSGSNSYLKPPLNKSYGSH---G 225

Query: 224 NGVKISPILNVPPPYIAKGAANLFGL 249
           + V+++P+LNVPP       ANLFGL
Sbjct: 226 HSVRVNPVLNVPP-------ANLFGL 244


>IMGA|Medtr5g017580.1 Unknown Protein (AHRD V1)
           chr05_pseudomolecule_IMGAG_V3.5 6167182-6168361 F
           EGN_Mt100125 20100825
          Length = 165

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 2   CSETSPRISFSNDLAHGDGTENEHVPRRDTTLLESNSDFEFNISSRLLDYESSLADELFS 61
           C+  SPRISFSND         +   R DT +   +SDFEF+++    +Y    ADELFS
Sbjct: 19  CAPMSPRISFSNDFVDLQQAMKQQERRSDTHIPVVSSDFEFSVT----NYSMMSADELFS 74

Query: 62  NGMLLPFQDNK--QETSPNVSQNISRN 86
            G LLP++DNK  + T+  + Q +  N
Sbjct: 75  KGRLLPYKDNKIQRATTTTLKQELLHN 101