Jatropha Genome Database

Jcr4S00006.260
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S00006.260 /short
         (74 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3 ...   135   6e-33
AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3 ...   107   1e-24
AT4G16144.1 | Symbols: AMSH3 | associated molecule with the SH3 ...   106   2e-24
AT1G10600.2 | Symbols: AMSH2 | associated molecule with the SH3 ...   105   5e-24
AT1G10600.3 | Symbols: AMSH2 | associated molecule with the SH3 ...   100   1e-22

>AT1G48790.1 | Symbols: AMSH1 | associated molecule with the SH3
           domain of STAM 1 | chr1:18043925-18047427 REVERSE
           LENGTH=507
          Length = 507

 Score =  135 bits (339), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 59/74 (79%), Positives = 67/74 (90%)

Query: 1   MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDGGPIYNTCTDV 60
           MLPE+VAIVMAP+D+SR HGIFRLT+PGGM+VIR+C +RGFH H  P DGGPIYNTC +V
Sbjct: 434 MLPEAVAIVMAPQDSSRNHGIFRLTTPGGMTVIRNCDRRGFHAHSSPEDGGPIYNTCKEV 493

Query: 61  YMNPNLKFDVIDLR 74
           YMNPNLKFDVIDLR
Sbjct: 494 YMNPNLKFDVIDLR 507


>AT1G10600.1 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503765-3505190 FORWARD
           LENGTH=223
          Length = 223

 Score =  107 bits (268), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/74 (56%), Positives = 58/74 (78%)

Query: 1   MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDGGPIYNTCTDV 60
           M+PE+ AIV+AP D+S+ +GIF+LT PGGM V+R C + GFHPH +P DG P+Y  C++V
Sbjct: 150 MVPEAFAIVVAPTDSSKSYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNV 209

Query: 61  YMNPNLKFDVIDLR 74
           Y N NL+F++ DLR
Sbjct: 210 YKNSNLRFEIFDLR 223


>AT4G16144.1 | Symbols: AMSH3 | associated molecule with the SH3
           domain of STAM 3 | chr4:9138053-9141422 REVERSE
           LENGTH=507
          Length = 507

 Score =  106 bits (265), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/74 (63%), Positives = 59/74 (79%)

Query: 1   MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDGGPIYNTCTDV 60
           MLPE+VAIVMAP D S  HGIF L+ P G+SVIR+CQQRGFHPH++  DG PIY  C+ V
Sbjct: 434 MLPEAVAIVMAPTDESTPHGIFHLSDPSGVSVIRNCQQRGFHPHEESEDGNPIYEHCSHV 493

Query: 61  YMNPNLKFDVIDLR 74
           ++N  LK++V+DLR
Sbjct: 494 FLNAKLKYEVLDLR 507


>AT1G10600.2 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503907-3505190 FORWARD
           LENGTH=166
          Length = 166

 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 58/74 (78%)

Query: 1   MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDGGPIYNTCTDV 60
           M+PE+ AIV+AP D+S+ +GIF+LT PGGM V+R C + GFHPH +P DG P+Y  C++V
Sbjct: 93  MVPEAFAIVVAPTDSSKSYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNV 152

Query: 61  YMNPNLKFDVIDLR 74
           Y N NL+F++ DLR
Sbjct: 153 YKNSNLRFEIFDLR 166


>AT1G10600.3 | Symbols: AMSH2 | associated molecule with the SH3
           domain of STAM 2 | chr1:3503765-3505190 FORWARD
           LENGTH=222
          Length = 222

 Score =  100 bits (250), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 57/74 (77%), Gaps = 1/74 (1%)

Query: 1   MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDGGPIYNTCTDV 60
           M+PE+ AIV+AP D+S  +GIF+LT PGGM V+R C + GFHPH +P DG P+Y  C++V
Sbjct: 150 MVPEAFAIVVAPTDSS-NYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNV 208

Query: 61  YMNPNLKFDVIDLR 74
           Y N NL+F++ DLR
Sbjct: 209 YKNSNLRFEIFDLR 222