Jatropha Genome Database

Jcr4S00006.260
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S00006.260 /short
         (74 letters)

Database: Medicago_aa3.5 
           47,529 sequences; 14,043,872 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g083940.1 STAM-binding protein (AHRD V1 *-** O95630);...   144   9e-36
IMGA|Medtr4g121470.1 STAM-binding protein (AHRD V1 *--* Q8R424);...   119   3e-28
IMGA|Medtr8g104310.1 AMSH-like protease (AHRD V1 *-*- B6K089_SCH...   116   3e-27
IMGA|Medtr8g104310.2 AMSH-like protease (AHRD V1 ***- Q96FJ0); c...   116   3e-27
IMGA|Medtr5g034240.1 STAM-binding protein (AHRD V1 **-* O95630);...   105   7e-24

>IMGA|Medtr6g083940.1 STAM-binding protein (AHRD V1 *-** O95630);
           contains Interpro domain(s)  IPR000555  Mov34/MPN/PAD-1
           chr06_pseudomolecule_IMGAG_V3.5 19446138-19438089 E
           EGN_Mt100125 20100825
          Length = 513

 Score =  144 bits (364), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 64/74 (86%), Positives = 69/74 (93%)

Query: 1   MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDGGPIYNTCTDV 60
           MLPESVAIVMAP D SR HGIFRLT+PGGMSVI+ C QRGFHPH+QPPDGGPIYNTCTDV
Sbjct: 440 MLPESVAIVMAPTDRSRNHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYNTCTDV 499

Query: 61  YMNPNLKFDVIDLR 74
           YMNP+LKF+VIDLR
Sbjct: 500 YMNPDLKFEVIDLR 513


>IMGA|Medtr4g121470.1 STAM-binding protein (AHRD V1 *--* Q8R424);
           contains Interpro domain(s)  IPR000555  Mov34/MPN/PAD-1
           chr04_pseudomolecule_IMGAG_V3.5 41909391-41900626 E
           EGN_Mt100125 20100825
          Length = 509

 Score =  119 bits (299), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 51/74 (68%), Positives = 62/74 (83%)

Query: 1   MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDGGPIYNTCTDV 60
           MLPE++AIVMAP DT   HGIF L+ PGG+SVIR+CQ+RGFHPH++P DG PIY  C+ V
Sbjct: 434 MLPEAIAIVMAPTDTESPHGIFHLSDPGGVSVIRNCQERGFHPHEEPSDGSPIYEHCSHV 493

Query: 61  YMNPNLKFDVIDLR 74
           YMN N+KFDV+DLR
Sbjct: 494 YMNANMKFDVLDLR 507


>IMGA|Medtr8g104310.1 AMSH-like protease (AHRD V1 *-*-
           B6K089_SCHJY); contains Interpro domain(s)  IPR000555
           Mov34/MPN/PAD-1 chr08_pseudomolecule_IMGAG_V3.5
           30732711-30724419 E EGN_Mt100125 20100825
          Length = 511

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/74 (86%), Positives = 70/74 (94%)

Query: 1   MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDGGPIYNTCTDV 60
           MLPE+VAIVMAP D+SR HGIFRLT+PGGMSVIR CQQRGFHPHD PPDGGPIY+TCTDV
Sbjct: 438 MLPEAVAIVMAPTDSSRTHGIFRLTTPGGMSVIRQCQQRGFHPHDPPPDGGPIYDTCTDV 497

Query: 61  YMNPNLKFDVIDLR 74
           Y+NP+LKFDVIDLR
Sbjct: 498 YLNPDLKFDVIDLR 511


>IMGA|Medtr8g104310.2 AMSH-like protease (AHRD V1 ***- Q96FJ0);
           contains Interpro domain(s)  IPR000555  Mov34/MPN/PAD-1
           chr08_pseudomolecule_IMGAG_V3.5 30729921-30724419 E
           EGN_Mt100125 20100825
          Length = 164

 Score =  116 bits (291), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/74 (86%), Positives = 70/74 (94%)

Query: 1   MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDGGPIYNTCTDV 60
           MLPE+VAIVMAP D+SR HGIFRLT+PGGMSVIR CQQRGFHPHD PPDGGPIY+TCTDV
Sbjct: 91  MLPEAVAIVMAPTDSSRTHGIFRLTTPGGMSVIRQCQQRGFHPHDPPPDGGPIYDTCTDV 150

Query: 61  YMNPNLKFDVIDLR 74
           Y+NP+LKFDVIDLR
Sbjct: 151 YLNPDLKFDVIDLR 164


>IMGA|Medtr5g034240.1 STAM-binding protein (AHRD V1 **-* O95630);
           contains Interpro domain(s)  IPR000555  Mov34/MPN/PAD-1
           chr05_pseudomolecule_IMGAG_V3.5 14392833-14388518 E
           EGN_Mt100125 20100825
          Length = 235

 Score =  105 bits (261), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 42/74 (56%), Positives = 59/74 (79%)

Query: 1   MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDGGPIYNTCTDV 60
           M+PE+ AIV+AP DTSR  G+FRLT P GM+++R+C +RGFHPH +P +G P+Y  C++V
Sbjct: 162 MIPEAFAIVLAPTDTSRSCGLFRLTEPDGMNILRNCPERGFHPHKEPDNGNPVYEHCSNV 221

Query: 61  YMNPNLKFDVIDLR 74
           Y N NL+F++ DLR
Sbjct: 222 YRNSNLRFEIFDLR 235