Jatropha Genome Database

Jcr4S00006.260
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Jcr4S00006.260 /short
         (74 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008310001 assembled CDS                                       139   2e-34
GSVIVT01035040001 assembled CDS                                       120   9e-29
GSVIVT01013737001 assembled CDS                                       107   8e-25
GSVIVT01008314001 assembled CDS                                        83   2e-17

>GSVIVT01008310001 assembled CDS
          Length = 506

 Score =  139 bits (351), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 60/74 (81%), Positives = 67/74 (90%)

Query: 1   MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDGGPIYNTCTDV 60
           MLPE++AIVMAP+D S+KHGIFRLT+PGGMSVIRHC QRGFHPH  P DGGPIY +CTDV
Sbjct: 433 MLPEAIAIVMAPKDASKKHGIFRLTTPGGMSVIRHCDQRGFHPHHSPSDGGPIYKSCTDV 492

Query: 61  YMNPNLKFDVIDLR 74
           YMNPN+ FDVIDLR
Sbjct: 493 YMNPNIHFDVIDLR 506


>GSVIVT01035040001 assembled CDS
          Length = 516

 Score =  120 bits (302), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 62/74 (83%)

Query: 1   MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDGGPIYNTCTDV 60
           MLPE++AIVMAP DTS  HGIF L+ P G+SVIR+CQQRGFHPH++ PDG PIY  C+ V
Sbjct: 443 MLPEAIAIVMAPTDTSSPHGIFHLSDPAGVSVIRNCQQRGFHPHEECPDGSPIYEHCSHV 502

Query: 61  YMNPNLKFDVIDLR 74
           YMNP LKFDV+DLR
Sbjct: 503 YMNPKLKFDVVDLR 516


>GSVIVT01013737001 assembled CDS
          Length = 275

 Score =  107 bits (268), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 44/74 (59%), Positives = 60/74 (81%)

Query: 1   MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDGGPIYNTCTDV 60
           M+PE+ AIVMAP DTSR +GIFRL+ P GMSV++ C + GFH H++P DGGPIY  C+++
Sbjct: 202 MVPEAFAIVMAPTDTSRSYGIFRLSDPVGMSVLKDCPEEGFHHHNEPADGGPIYEHCSNI 261

Query: 61  YMNPNLKFDVIDLR 74
           Y+N NL+F++ DLR
Sbjct: 262 YINSNLRFEIFDLR 275


>GSVIVT01008314001 assembled CDS
          Length = 51

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/50 (74%), Positives = 43/50 (86%)

Query: 1  MLPESVAIVMAPRDTSRKHGIFRLTSPGGMSVIRHCQQRGFHPHDQPPDG 50
          MLPE++A+VM PRD S+KHGIFRLT+PGGMS+I HC QRGFHPH  P DG
Sbjct: 1  MLPEAIAMVMPPRDVSKKHGIFRLTTPGGMSIIGHCDQRGFHPHHPPSDG 50