Jatropha Genome Database
- Jcr4S02936.20
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Jcr4S02936.20
(195 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
51325.m000005 DNA-directed RNA polymerase beta chain, putative 354 1e-98
30185.m000926 DNA-directed RNA polymerase beta chain, putative 252 8e-68
30195.m000308 DNA-directed RNA polymerase beta chain, putative 129 7e-31
30130.m000272 DNA-directed RNA polymerase III largest subunit, p... 98 2e-21
29784.m000366 DNA-directed RNA polymerase II largest subunit, pu... 82 1e-16
27810.m000650 DNA-directed RNA polymerase I largest subunit, put... 70 6e-13
30131.m007197 DNA-directed RNA polymerase, putative 63 9e-11
30190.m011113 DNA-directed RNA polymerase, putative 58 2e-09
>51325.m000005 DNA-directed RNA polymerase beta chain, putative
Length = 178
Score = 354 bits (908), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 174/178 (97%), Positives = 175/178 (98%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI
Sbjct: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
Query: 61 REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 120
REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVE RAICLHPLVCKGFNADF
Sbjct: 61 REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVESRAICLHPLVCKGFNADF 120
Query: 121 DGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRR 178
DGDQMAVHVPLSLEAQ +ARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTS NRR
Sbjct: 121 DGDQMAVHVPLSLEAQAKARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSRNRR 178
>30185.m000926 DNA-directed RNA polymerase beta chain, putative
Length = 349
Score = 252 bits (643), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 122/135 (90%), Positives = 128/135 (94%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKI 60
MLGKRVDYSGRSVI+VGPS+SLHRCGLPREIAIELFQIFVI GLIRQHLASNIGVAKSKI
Sbjct: 1 MLGKRVDYSGRSVIIVGPSISLHRCGLPREIAIELFQIFVICGLIRQHLASNIGVAKSKI 60
Query: 61 REKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADF 120
REKEPIVWEILQEVMQGHPVLLNRA TLHRLGIQAFQPILVEGRAICLHPLV KGFNADF
Sbjct: 61 REKEPIVWEILQEVMQGHPVLLNRALTLHRLGIQAFQPILVEGRAICLHPLVYKGFNADF 120
Query: 121 DGDQMAVHVPLSLEA 135
GDQM VH ++L++
Sbjct: 121 GGDQMVVHKRINLDS 135
>30195.m000308 DNA-directed RNA polymerase beta chain, putative
Length = 69
Score = 129 bits (325), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 61/69 (88%), Positives = 64/69 (92%)
Query: 75 MQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLE 134
MQGH VLLNR PTLHRLGI+AFQPILVEGR ICLHPLVCKGFNADF+GDQM VHVPLSLE
Sbjct: 1 MQGHSVLLNRMPTLHRLGIRAFQPILVEGRTICLHPLVCKGFNADFNGDQMVVHVPLSLE 60
Query: 135 AQTEARLLM 143
AQ EARLL+
Sbjct: 61 AQMEARLLI 69
>30130.m000272 DNA-directed RNA polymerase III largest subunit,
putative
Length = 1383
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 103/211 (48%), Gaps = 28/211 (13%)
Query: 3 GKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQIFVIRGLIRQHL 49
GKRV+++GR+VI P+L + +P +A IE + V G +
Sbjct: 330 GKRVEFTGRTVISPDPNLKITEVAIPIHMARILSYPERVSHHNIEKLRQLVSNGPQKYPG 389
Query: 50 ASN-----------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP 98
AS IG + I E+ + + + G VL NR P+LHR+ I +
Sbjct: 390 ASTVRYPDGSSKRLIGSYRKTIAEELTFGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRA 449
Query: 99 ILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLM-FSHMNLLSPAIGDP 157
++ R + + VC +NADFDGD+M +HVP + EA+TEA LLM S NL +P G+
Sbjct: 450 RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVSQNNLCTPKNGEI 509
Query: 158 ISVPTQDMLIGLYVLTSGNRRGICANRALLS 188
+ TQD L +++T RR +RA S
Sbjct: 510 LVASTQDFLTSSFLIT---RRDTFYDRAAFS 537
>29784.m000366 DNA-directed RNA polymerase II largest subunit,
putative
Length = 1855
Score = 82.0 bits (201), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 26/199 (13%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL--------FQIFVIRGLIR--QHLA 50
++GKRVD+S R+VI P++++ + G+P IA+ L + I ++ L+ H
Sbjct: 350 LMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 409
Query: 51 SNIGVAKSKIREKE----------------PIVWEILQEVMQGHPVLLNRAPTLHRLGIQ 94
AK IR+ + +++ + + G VL NR P+LH++ I
Sbjct: 410 PGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM 469
Query: 95 AFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAI 154
+ ++ L+ V +NADFDGD+M +HVP S E + E LM ++SP
Sbjct: 470 GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQS 529
Query: 155 GDPISVPTQDMLIGLYVLT 173
P+ QD L+G +T
Sbjct: 530 NRPVMGIVQDTLLGCRKIT 548
>27810.m000650 DNA-directed RNA polymerase I largest subunit,
putative
Length = 1686
Score = 70.1 bits (170), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 50/223 (22%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL--------FQIFVIRGLI------- 45
M+GKRV+Y+ RSVI P + ++ G+P A++L + I +R +
Sbjct: 436 MMGKRVNYACRSVISPDPYIGVNEIGIPPCFAVKLTYPERVTPWNIAKLRNAVINGSECH 495
Query: 46 --RQHLASNIGV--------AKSKIREKEP--------------------IVWEILQEVM 75
H + + A+ I K P IV+ LQ+
Sbjct: 496 PGATHYVDKLSINKLPPARKARISISRKLPSSRGAVTQAGKGSECEFEGKIVYRHLQD-- 553
Query: 76 QGHPVLLNRAPTLHRLGIQAFQPILVEG-RAICLHPLVCK-GFNADFDGDQMAVHVPLSL 133
G VL+NR PTLH+ I A +++G + + +H C +NADFDGD+M VH P
Sbjct: 554 -GDVVLVNRQPTLHKPSIMAHVVRVLKGEKTLRMHYANCSITYNADFDGDEMNVHFPQDE 612
Query: 134 EAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGN 176
++ EA ++ ++ + P+ G+P+ QD ++ +LT +
Sbjct: 613 VSRAEAYNIVNANNQFVRPSNGEPLRGLIQDHIVSAVLLTKKD 655
>30131.m007197 DNA-directed RNA polymerase, putative
Length = 991
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 16/181 (8%)
Query: 8 YSGRSVIVVGPSLSLHRCGLPREIA--------IELFQIFVIRGLIRQHLASNI--GVAK 57
+S RSVI ++ G+P EIA + + ++ L+ L G +
Sbjct: 324 FSSRSVITGDAYKCVNEIGIPSEIAQRITFEERVNAHNMQYLQELVDNKLCLTYRDGSST 383
Query: 58 SKIREKEP------IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPL 111
+RE + + + +M G V +NR PT H+ +QA + +G + ++PL
Sbjct: 384 YSLREGSKGHTFLRLGQIVHRRIMDGDMVFINRPPTTHKHSLQALSVYVHDGHTVKINPL 443
Query: 112 VCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYV 171
+C +ADFDGD + + P SL A+ E L LLS G+ T D L+ L
Sbjct: 444 ICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTSDSLLSLKT 503
Query: 172 L 172
+
Sbjct: 504 M 504
>30190.m011113 DNA-directed RNA polymerase, putative
Length = 1475
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 21/191 (10%)
Query: 1 MLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQI---------------FVIRGLI 45
+LGKR D S R V+V P++ G+P IA E QI +R L
Sbjct: 320 VLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIA-ERLQISEHLTTWNWDKLNTCCEVRLLE 378
Query: 46 R--QHLASNIGVAKSKIREKEPIVWEIL-QEVMQGHPVLLNRAPTLHRLGIQAFQ-PILV 101
+ H+ + + + R KE + +I+ + + G VL+NR P++H+ + A +L
Sbjct: 379 KGDMHVRREGKLVRVR-RTKELRIGDIIYRPLNDGDTVLINRPPSIHQHSLIALSVKVLP 437
Query: 102 EGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQTEARLLMFSHMNLLSPAIGDPISVP 161
+ ++PL+C F DFDGD + +VP S++ + E R L+ L++ G +
Sbjct: 438 ATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVELRELVALDKQLINVQNGRNLLSF 497
Query: 162 TQDMLIGLYVL 172
+QD L+ +++
Sbjct: 498 SQDSLVAAHLV 508