hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19504970/chunk_1/iprscan-20080502-19504970.nocrc
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Query sequence: KIAA2037
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03638.5.ls Tesmin/TSO1-like CXC domain                    171.3    2.2e-48   2
PF03638.5.fs Tesmin/TSO1-like CXC domain                    167.4    2.6e-47   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03638.5.fs   1/2     265   305 ..     1    42 []    79.2  5.1e-22
PF03638.5.ls   1/2     265   305 ..     1    42 []    81.1  3.1e-21
PF03638.5.fs   2/2     339   380 ..     1    42 []    88.2  1.3e-24
PF03638.5.ls   2/2     339   380 ..     1    42 []    90.2  5.9e-24

Alignments of top-scoring domains:
PF03638.5.fs: domain 1 of 2, from 265 to 305: score 79.2, E = 5.1e-22
                   *->rhkKgCnCKKSkCLKlYCECFaagvfCsdnCkCidCkNneey<-*
                      r +K+CnC+KS CLKlYC+CFa+g+fC++ C+C++C+Nn+e+   
    KIAA2037   265    RPRKPCNCTKSLCLKLYCDCFANGEFCNN-CNCTNCYNNLEH    305  

PF03638.5.ls: domain 1 of 2, from 265 to 305: score 81.1, E = 3.1e-21
                   *->rhkKgCnCKKSkCLKlYCECFaagvfCsdnCkCidCkNneey<-*
                      r +K+CnC+KS CLKlYC+CFa+g+fC++ C+C++C+Nn+e+   
    KIAA2037   265    RPRKPCNCTKSLCLKLYCDCFANGEFCNN-CNCTNCYNNLEH    305  

PF03638.5.fs: domain 2 of 2, from 339 to 380: score 88.2, E = 1.3e-24
                   *->rhkKgCnCKKSkCLKlYCECFaagvfCsdnCkCidCkNneey<-*
                      rh+KgCnCK+S+CLK+YCEC++a+++Cs++CkCi+CkN+ee+   
    KIAA2037   339    RHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEES    380  

PF03638.5.ls: domain 2 of 2, from 339 to 380: score 90.2, E = 5.9e-24
                   *->rhkKgCnCKKSkCLKlYCECFaagvfCsdnCkCidCkNneey<-*
                      rh+KgCnCK+S+CLK+YCEC++a+++Cs++CkCi+CkN+ee+   
    KIAA2037   339    RHSKGCNCKRSGCLKNYCECYEAKIMCSSICKCIGCKNFEES    380  

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