hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19490947/chunk_1/iprscan-20080502-19490947.nocrc
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Query sequence: KIAA2036
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00192                                                 338.9    3.3e-97   7
SM00209                                                 126.6    2.7e-33   3
SM00214                                                  60.0      3e-13   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00192    1/7     261   299 ..     1    47 []    58.3    1e-12
SM00192    2/7     301   335 ..     1    47 []    42.6  5.3e-08
SM00192    3/7     337   374 ..     1    47 []    51.1  1.4e-10
SM00192    4/7     377   416 ..     1    47 []    50.6  2.1e-10
SM00192    5/7     450   487 ..     1    47 []    57.0  2.3e-12
SM00192    6/7     488   528 ..     1    47 []    41.4  1.2e-07
SM00192    7/7     585   623 ..     1    47 []    37.9  1.4e-06
SM00209    1/3     705   756 ..     1    66 []    49.6  4.1e-10
SM00209    2/3     761   816 ..     1    66 []    53.3  3.1e-11
SM00214    1/2     878   919 ..     1    75 []     7.9      1.3
SM00209    3/3     920   973 ..     1    66 []    23.7    0.024
SM00214    2/2     975  1032 ..     1    75 []    52.1  7.3e-11

Alignments of top-scoring domains:
SM00192: domain 1 of 7, from 261 to 299: score 58.3, E = 1e-12
                   *->tCspgepneFqCg.ngrCIplswvCDGddDCgDGSDEdpaidpenCp
                       C++g   e  C++ng+C+p  w+CD++dDCgDGSDE      e+C+
    KIAA2036   261    ACAEG---EALCQeNGHCVPHGWLCDNQDDCGDGSDE------EGCA 298  

                   s<-*
                       
    KIAA2036   299 A    299  

SM00192: domain 2 of 7, from 301 to 335: score 42.6, E = 5.3e-08
                   *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps
                       C++g   + +C++g+C+pl+++CD++dDCgDG DE         ps
    KIAA2036   301    GCGEG---QMTCSSGHCLPLALLCDRQDDCGDGTDE---------PS 335  

                   <-*
                      
    KIAA2036     -     -    

SM00192: domain 3 of 7, from 337 to 374: score 51.1, E = 1.4e-10
                   *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps
                      +C++g     +C++grC+p +++CDG++DC D  DE      e C  
    KIAA2036   337    PCPQG---LLACADGRCLPPALLCDGHPDCLDAADE------ESCLG 374  

                   <-*
                      
    KIAA2036     -     -    

SM00192: domain 4 of 7, from 377 to 416: score 50.6, E = 2.1e-10
                   *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps
                      tC pg   e  C +g+C+   ++CDG+ DC+DG DE+p     +Cp 
    KIAA2036   377    TCVPG---EVSCVDGTCLGAIQLCDGVWDCPDGADEGP----GHCPL 416  

                   <-*
                      
    KIAA2036     -     -    

SM00192: domain 5 of 7, from 450 to 487: score 57.0, E = 2.3e-12
                   *->tCspgepneFqCgngrCIplswvCDGddDCgDGSDEdpaidpenCps
                      +C+p    eF+Cg+g+C p+ w+CD + DC+DGSDE      ++C+ 
    KIAA2036   450    PCGPF---EFRCGSGECTPRGWRCDQEEDCADGSDE------RGCGG 487  

                   <-*
                      
    KIAA2036     -     -    

SM00192: domain 6 of 7, from 488 to 528: score 41.4, E = 1.2e-07
                   *->tCspgepneFqCgngr.CIplswvCDGddDCgDGSDEdpaidpenCp
                      +C+p+   +  C+ g +C++ +++CDG+  C+DGSDE+p    + C 
    KIAA2036   488    PCAPH---HAPCARGPhCVSPEQLCDGVRQCPDGSDEGP----DACV 527  

                   s<-*
                   +   
    KIAA2036   528 E    528  

SM00192: domain 7 of 7, from 585 to 623: score 37.9, E = 1.4e-06
                   *->tCspgepneFqCg..ngrCIplswvCDGddDCgDGSDEdpaidpenC
                       C+      F Cg   g C+  +++CDG +DC+ G+DE      ++C
    KIAA2036   585    LCPGL----FPCGvaPGLCLTPEQLCDGIPDCPQGEDE------LDC 621  

                   ps<-*
                   +    
    KIAA2036   622 GG    623  

SM00209: domain 1 of 3, from 705 to 756: score 49.6, E = 4.1e-10
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w++Ws+W+pCS +tCG +      + R+R      csp +       
    KIAA2036   705    WGPWSPWGPCS-RTCGPW-----GQGRSR-----RCSPLG---LLVL 737  

                   epCs....EtrpCntqpnLqpCp<-*
                   ++C+++++++++C+t     +Cp   
    KIAA2036   738 QNCPgpehQSQACFTA----ACP    756  

SM00209: domain 2 of 3, from 761 to 816: score 53.3, E = 3.1e-11
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      ws+Ws+WS CS ++C +G     + tR+R+    c+sp     qngg
    KIAA2036   761    WSTWSPWSVCS-EPC-RG-----TMTRQRQ----CHSP-----QNGG 791  

                   epCs..........EtrpCntqpnLqpCp<-*
                   + C   +++ +++++t+pC  +     Cp   
    KIAA2036   792 RTCAalpgglhstrQTKPCPQD----GCP    816  

SM00214: domain 1 of 2, from 878 to 919: score 7.9, E = 1.3
                   *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc
                      C+  +G++y +g++ k+d  Cq C C+dg     +++ C + p    
    KIAA2036   878    CLV-DGARYWPGQRIKAD--CQLCICQDG-----RPRRCRLNP---- 912  

                   kdsdCpnperlpavaekppGeCCpeyrC<-*
                      dC+ +              C+       
    KIAA2036   913 ---DCAVD--------------CG----    919  

SM00209: domain 3 of 3, from 920 to 973: score 23.7, E = 0.024
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      ws+Ws+W  C g +CG+     +++   R       ++p+p     g
    KIAA2036   920    WSSWSPWAKCLG-PCGSQ----SIQWSFR-----SSNNPRP--SGRG 954  

                   epCs....EtrpCntqpnLqpCp<-*
                   ++C + ++  r C t+    pC+   
    KIAA2036   955 RQCRgihrKARRCQTE----PCE    973  

SM00214: domain 2 of 2, from 975 to 1032: score 52.1, E = 7.3e-11
                   *->CvhpnGevyrdgetWkpdkpCqiCtCldgekvlCdkveCppppslpc
                      C h  G+v+r+ge+W+ + pC++C+Cl+  +++C+++ Cp+      
    KIAA2036   975    CEH-QGQVHRVGERWHGG-PCRVCQCLHNLTAHCSPY-CPLG----- 1013 

                   kdsdCpnperlpavaekppGeCCpeyrC<-*
                      +Cp+++ l   +e  + +CC+   C   
    KIAA2036  1014 ---SCPQGWVL---VEGTGESCCH---C    1032 

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