hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19455099/chunk_1/iprscan-20080502-19455099.nocrc
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Query sequence: KIAA2034
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                 118.8    3.8e-35   1
SM00015                                                  29.3    0.00052   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1       1   377 [.     1   771 []   118.8  3.8e-35
SM00015    1/1     378   400 ..     1    23 []    29.3  0.00052

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 1 to 377: score 118.8, E = 3.8e-35
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                      r ++ +                                         
    KIAA2034     1    RLNRAL----------------------------------------- 6    

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlre
                                     r                               
    KIAA2034     7 -----------------DR------------------------------- 8    

                   keNQsIiISGESGAGKTEatKkimqYLAavsgsvesvedqiLesNPiLEA
                                                                     
    KIAA2034     - -------------------------------------------------- -    

                   FGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLLEKSRVVsQakg
                                                                     
    KIAA2034     - -------------------------------------------------- -    

                   ERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnqggtpfankrys
                                           s+           +qg          
    KIAA2034     9 ------------------------SP-----------RQG---------- 13   

                   sgcltvdgiDDaeeFkeTdEvtlkAmrvlGfseeEqesIFrilAAILHLG
                                                                     
    KIAA2034     - -------------------------------------------------- -    

                   NieFeegrntgdnaavtslkvadeeelqkaAeLLgvdpeeLekaLtkRki
                                                                     
    KIAA2034     - -------------------------------------------------- -    

                   ktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWLVkrINkslsayf
                                                                  a+f
    KIAA2034    14 -----------------------------------------------ASF 16   

                   IGVLDIyGFEiFekNSFEQfCINyaNEKLQQfFnqhvFKlEQEEYerEGI
                    G+LDI+GFEiF+ NSFEQ+CINy+NEKLQQ+Fn+ +F+lEQEEY+rEGI
    KIAA2034    17 LGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGI 66   

                   eWtfIdFfliDNQpciDLIEkKgkrPlGIlslLDEeClfHAqPkgTDqtF
                   +Wtf dF+l D+QpciDLIE ++ +P+G+l+lLDEeC+f   Pk+TD++F
    KIAA2034    67 PWTFLDFGL-DLQPCIDLIERPA-NPPGLLALLDEECWF---PKATDKSF 111  

                   leKLnkalyhqhhkkhphfskprkSlkkgkpkkrfgrtaFiikHYAGdVt
                   +eK       q  ++hp+f+ pr           +++++F++ HYAG+V+
    KIAA2034   112 VEKV-----AQEQGGHPKFQRPRH---------LRDQADFSVLHYAGKVD 147  

                   YnveGFLeKNkDtLfedlieLlqsSknpliasLFpeeadqsssaakekss
                   Y ++ +L KN+D+L++++ +Ll++S+++l a+++++              
    KIAA2034   148 YKANEWLMKNMDPLNDNVAALLHQSTDRLTAEIWKD-------------E 184  

                   .ggagksrkagr.r.eps.k..............................
                   +gg +  ++ g+ +++p ++ ++ ++  ++++ ++  + ++ ++ +++++
    KIAA2034   185 hGGFQQFSFLGSfPpSPPgSaercssaisppgvegivgleqvsslgdgpp 234  

                   ....gtisskkrppTvGsqFk.sLneLmetLnstnPHFIRCIKPNeeKkp
                   ++++     +++++TvG+++k+sL+ Lm+tL++tnP F+RCI PN+eK++
    KIAA2034   235 ggrpR----RGMFRTVGQLYKeSLSRLMATLSNTNPSFVRCIVPNHEKRA 280  

                   gvFdaslVlhQLrylGvLEniRIRraGFPyRlpfdeFlqRYkvLlpktwp
                   g+ ++ lVl+QLr++GvLE+iRI+r GFP+R+ f+eF+qRY+ +l ++  
    KIAA2034   281 GKLEPRLVLDQLRCNGVLEGIRICRQGFPNRILFQEFRQRYE-ILTPNAI 329  

                   pwggewknrlfgdakkacealLqslglgiegdnldeeeyqiGkTKvFlRn
                   p+g       f+d k+ace+++q+l+       ld++ y++G +K+F+R 
    KIAA2034   330 PKG-------FMDGKQACEKMIQALE-------LDPNLYRVGQSKIFFR- 364  

                   pgqlaeLEelRee<-*
                   +g+la LEe+R+    
    KIAA2034   365 AGVLAQLEEERDL    377  

SM00015: domain 1 of 1, from 378 to 400: score 29.3, E = 0.00052
                   *->rleraAiiIQaawRGylaRkryk<-*
                      +++ +++ +Qaa+RGylaR+ ++   
    KIAA2034   378    KVTDIIVSFQAAARGYLARRAFQ    400  

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