hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080909/iprscan-20080909-09491003/chunk_1/iprscan-20080909-09491003.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA2033 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 452.2 2.6e-131 19 SM00349 102.3 5.6e-26 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 28 90 .. 1 62 [] 102.3 5.6e-26 SM00355 1/19 235 257 .. 1 23 [] 8.6 34 SM00355 2/19 262 284 .. 1 23 [] 22.7 0.05 SM00355 3/19 290 312 .. 1 23 [] 25.5 0.0075 SM00355 4/19 318 340 .. 1 23 [] 22.9 0.045 SM00355 5/19 346 368 .. 1 23 [] 28.0 0.0013 SM00355 6/19 374 396 .. 1 23 [] 23.6 0.027 SM00355 7/19 402 424 .. 1 23 [] 26.0 0.0051 SM00355 8/19 430 452 .. 1 23 [] 24.3 0.017 SM00355 9/19 458 480 .. 1 23 [] 26.1 0.005 SM00355 10/19 486 508 .. 1 23 [] 29.5 0.00046 SM00355 11/19 514 536 .. 1 23 [] 23.8 0.024 SM00355 12/19 542 564 .. 1 23 [] 25.6 0.0071 SM00355 13/19 570 592 .. 1 23 [] 31.6 0.0001 SM00355 14/19 598 620 .. 1 23 [] 6.8 54 SM00355 15/19 626 648 .. 1 23 [] 25.7 0.0066 SM00355 16/19 654 676 .. 1 23 [] 28.3 0.001 SM00355 17/19 682 704 .. 1 23 [] 22.5 0.059 SM00355 18/19 710 732 .. 1 23 [] 23.1 0.039 SM00355 19/19 738 760 .. 1 23 [] 27.6 0.0017 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 28 to 90: score 102.3, E = 5.6e-26 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk +tF+DVA++FsqEEW++LDpaQr+LYRdVMlENY+nLvSL+ + ++ KIAA2033 28 LTFRDVAIEFSQEEWKCLDPAQRTLYRDVMLENYRNLVSLDISSKCT 74 p.dliskLEqgeEpwi<-* ++++s + E + KIAA2033 75 MkEFLSTAQGNREVFH 90 SM00355: domain 1 of 19, from 235 to 257: score 8.6, E = 34 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ gk f+ + L++H+ +H KIAA2033 235 FQCNE-SGKAFNYSsLLRKHQIIH 257 SM00355: domain 2 of 19, from 262 to 284: score 22.7, E = 0.05 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f++k++L H r H KIAA2033 262 YKCDV-CGKLFNQKrNLACHRRCH 284 SM00355: domain 3 of 19, from 290 to 312: score 25.5, E = 0.0075 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+fs+ ++L+ H r H KIAA2033 290 YKCNE-CGKTFSQTsSLTCHRRLH 312 SM00355: domain 4 of 19, from 318 to 340: score 22.9, E = 0.045 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+k f+ k+ L+rH +H KIAA2033 318 YKCEE-CDKAFHFKsILERHRIIH 340 SM00355: domain 5 of 19, from 346 to 368: score 28.0, E = 0.0013 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f++k+ L+rH r H KIAA2033 346 YKCNE-CGKTFRQKsILTRHHRLH 368 SM00355: domain 6 of 19, from 374 to 396: score 23.6, E = 0.027 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+fs+k++L+ H r H KIAA2033 374 YKCNE-CGKTFSHKsSLTCHHRLH 396 SM00355: domain 7 of 19, from 402 to 424: score 26.0, E = 0.0051 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+fs+k++L+ H r H KIAA2033 402 YKCNE-CGKTFSHKsSLTCHRRLH 424 SM00355: domain 8 of 19, from 430 to 452: score 24.3, E = 0.017 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+k +s +++++ H ++H KIAA2033 430 YKCEE-CDKAYSFRsNFEIHRKIH 452 SM00355: domain 9 of 19, from 458 to 480: score 26.1, E = 0.005 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+fs+ ++L+ H r+H KIAA2033 458 YKCNE-CGKTFSRTsSLTCHRRRH 480 SM00355: domain 10 of 19, from 486 to 508: score 29.5, E = 0.00046 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+k f+ k++L+rH r+H KIAA2033 486 YKCEE-CDKAFRFKsNLERHRRIH 508 SM00355: domain 11 of 19, from 514 to 536: score 23.8, E = 0.024 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+fs+k+ L+ H r H KIAA2033 514 YKCNE-CGKTFSRKsYLTCHHRLH 536 SM00355: domain 12 of 19, from 542 to 564: score 25.6, E = 0.0071 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+k+fs+k++L+ H r H KIAA2033 542 YKCNE-CSKTFSWKsSLTCHRRLH 564 SM00355: domain 13 of 19, from 570 to 592: score 31.6, E = 0.0001 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+f+++ LkrH r H KIAA2033 570 YKCKE-CGKTFNQQlTLKRHRRLH 592 SM00355: domain 14 of 19, from 598 to 620: score 6.8, E = 54 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC+ +k +s k++L+ H+++H KIAA2033 598 YKCED-SDKAYSFKsNLEIHQKIH 620 SM00355: domain 15 of 19, from 626 to 648: score 25.7, E = 0.0066 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+fs+ ++L+ H r H KIAA2033 626 YKCNE-CGKTFSRTsSLTCHRRLH 648 SM00355: domain 16 of 19, from 654 to 676: score 28.3, E = 0.001 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ C+k f+ k++L+ H r+H KIAA2033 654 YKCEE-CDKAFRVKsNLEGHRRIH 676 SM00355: domain 17 of 19, from 682 to 704: score 22.5, E = 0.059 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+fs+k+ ++ H r H KIAA2033 682 YKCNE-CGKTFSRKsYFVCHHRLH 704 SM00355: domain 18 of 19, from 710 to 732: score 23.1, E = 0.039 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs+k++L+ H r H KIAA2033 710 YKCNE-CGKNFSQKsSLICHHRLH 732 SM00355: domain 19 of 19, from 738 to 760: score 27.6, E = 0.0017 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk+fs+k++L+ H r H KIAA2033 738 YKCNE-CGKTFSQKsNLTCHRRLH 760 //