hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19404834/chunk_1/iprscan-20080502-19404834.nocrc
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Query sequence: KIAA2031
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00013.19.ls KH domain                                      106.6    6.9e-29   2
PF00013.19.fs KH domain                                      103.0    2.6e-28   2
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           20.2      9e-07   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           22.0    0.00077   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00013.19.fs   1/2      44   104 ..     1    73 []    46.2  2.7e-12
PF00013.19.ls   1/2      44   104 ..     1    73 []    48.0    3e-11
PF00013.19.fs   2/2     139   198 ..     1    73 []    56.8  2.7e-15
PF00013.19.ls   2/2     139   198 ..     1    73 []    58.6  1.9e-14
PF00097.15.fs   1/1     464   503 ..     1    50 []    20.2    9e-07
PF00097.15.ls   1/1     464   503 ..     1    50 []    22.0  0.00077

Alignments of top-scoring domains:
PF00013.19.fs: domain 1 of 2, from 44 to 104: score 46.2, E = 2.7e-12
                   *->tirili.psskvGriIGkgGstIkeIreetGakIdipddgesknlpe
                      t+ + +++s++v  i G++G +Ik++r +t++ I+ p  g      e
    KIAA2031    44    TECVPVpSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRG------E 84   

                   dplngsgertvtIsGtpeavekAkkli<-*
                   +p       ++ ++G +e+ve Ak++i   
    KIAA2031    85 EP-------VFIVTGRKEDVEMAKREI    104  

PF00013.19.ls: domain 1 of 2, from 44 to 104: score 48.0, E = 3e-11
                   *->tirili.psskvGriIGkgGstIkeIreetGakIdipddgesknlpe
                      t+ + +++s++v  i G++G +Ik++r +t++ I+ p  g      e
    KIAA2031    44    TECVPVpSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRG------E 84   

                   dplngsgertvtIsGtpeavekAkkli<-*
                   +p       ++ ++G +e+ve Ak++i   
    KIAA2031    85 EP-------VFIVTGRKEDVEMAKREI    104  

PF00013.19.fs: domain 2 of 2, from 139 to 198: score 56.8, E = 2.7e-15
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      ti++ +p + vG++ G++G+tIk+I+++t + I  p+ +      ++
    KIAA2031   139    TIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------KE 179  

                   plngsgertvtIsGtpeavekAkkli<-*
                   p       ++ ++G pe+v++A+++i   
    KIAA2031   180 P-------VFAVTGMPENVDRAREEI    198  

PF00013.19.ls: domain 2 of 2, from 139 to 198: score 58.6, E = 1.9e-14
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      ti++ +p + vG++ G++G+tIk+I+++t + I  p+ +      ++
    KIAA2031   139    TIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------KE 179  

                   plngsgertvtIsGtpeavekAkkli<-*
                   p       ++ ++G pe+v++A+++i   
    KIAA2031   180 P-------VFAVTGMPENVDRAREEI    198  

PF00097.15.fs: domain 1 of 1, from 464 to 503: score 20.2, E = 9e-07
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C +C e++  +      + pCgH     +fC +C +r    + +  C
    KIAA2031   464    CVVCAEGEVMAA-----LVPCGHN----LFCMDCAVRICG-KSEPEC 500  

                   plC<-*
                   p C   
    KIAA2031   501 PAC    503  

PF00097.15.ls: domain 1 of 1, from 464 to 503: score 22.0, E = 0.00077
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C +C e++  +      + pCgH     +fC +C +r    + +  C
    KIAA2031   464    CVVCAEGEVMAA-----LVPCGHN----LFCMDCAVRICG-KSEPEC 500  

                   plC<-*
                   p C   
    KIAA2031   501 PAC    503  

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