# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/ef03841.fasta.nr -Q ../query/KIAA2031.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA2031, 515 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7815076 sequences Expectation_n fit: rho(ln(x))= 6.2101+/-0.000202; mu= 7.8045+/- 0.011 mean_var=122.6733+/-23.821, 0's: 37 Z-trim: 64 B-trim: 383 in 2/65 Lambda= 0.115798 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|134047829|sp|Q86XN8.3|MEX3D_HUMAN RecName: Full ( 651) 3548 603.9 4.3e-170 gi|114674462|ref|XP_524036.2| PREDICTED: ring fing ( 740) 3486 593.6 6.1e-167 gi|118196851|gb|AAI13385.1| MEX3D protein [Homo sa ( 489) 3233 551.2 2.4e-154 gi|33317618|gb|AAQ04763.1|AF458084_1 bcl-2 ARE RNA ( 488) 3226 550.0 5.4e-154 gi|76622862|ref|XP_583835.2| PREDICTED: similar to ( 473) 2693 460.9 3.4e-127 gi|109480235|ref|XP_234921.4| PREDICTED: similar t ( 697) 2580 442.2 2.1e-121 gi|145651818|ref|NP_941017.2| ring finger and KH d ( 718) 2555 438.0 4e-120 gi|134034170|sp|Q3UE17.2|MEX3D_MOUSE RecName: Full ( 643) 2538 435.2 2.6e-119 gi|73987544|ref|XP_855104.1| PREDICTED: similar to ( 551) 2237 384.8 3.2e-104 gi|74207940|dbj|BAE29094.1| unnamed protein produc ( 427) 2102 362.2 1.6e-97 gi|148699605|gb|EDL31552.1| ring finger (C3HC4 typ ( 429) 1942 335.4 1.8e-89 gi|126323579|ref|XP_001370878.1| PREDICTED: simila ( 666) 1771 307.0 1e-80 gi|124297228|gb|AAI31872.1| Zgc:158350 [Danio reri ( 537) 1458 254.7 4.7e-65 gi|119589889|gb|EAW69483.1| ring finger and KH dom ( 208) 1362 238.2 1.6e-60 gi|166796480|gb|AAI59375.1| Mex3d protein [Xenopus ( 439) 1199 211.3 4.3e-52 gi|73951683|ref|XP_545877.2| PREDICTED: similar to ( 678) 1192 210.3 1.3e-51 gi|148744268|gb|AAI42552.1| LOC100101285 protein [ ( 595) 1178 207.9 6.1e-51 gi|194206214|ref|XP_001915985.1| PREDICTED: mex-3 ( 574) 1157 204.4 6.8e-50 gi|120577567|gb|AAI30114.1| LOC733399 protein [Xen ( 440) 1151 203.3 1.1e-49 gi|134034169|sp|A1L3F4.1|MEX3B_XENLA RecName: Full ( 507) 1142 201.8 3.5e-49 gi|109082143|ref|XP_001110186.1| PREDICTED: simila ( 570) 1139 201.4 5.5e-49 gi|126273621|ref|XP_001362773.1| PREDICTED: hypoth ( 565) 1137 201.1 6.8e-49 gi|149257537|ref|XP_620516.3| PREDICTED: ring fing ( 576) 1136 200.9 7.8e-49 gi|109459006|ref|XP_218846.4| PREDICTED: similar t (1036) 1137 201.3 1.1e-48 gi|114658524|ref|XP_523137.2| PREDICTED: ring fing ( 572) 1126 199.2 2.5e-48 gi|74762391|sp|Q6ZN04.1|MEX3B_HUMAN RecName: Full= ( 569) 1125 199.1 2.8e-48 gi|117644854|emb|CAL37893.1| hypothetical protein ( 569) 1123 198.7 3.5e-48 gi|194676729|ref|XP_001790292.1| PREDICTED: simila ( 588) 1123 198.7 3.6e-48 gi|117646414|emb|CAL38674.1| hypothetical protein ( 569) 1119 198.0 5.5e-48 gi|71052146|gb|AAH36211.1| MEX3B protein [Homo sap ( 569) 1117 197.7 7e-48 gi|118764337|gb|AAI28670.1| LOC100036809 protein [ ( 493) 1104 195.5 2.8e-47 gi|126320769|ref|XP_001362272.1| PREDICTED: simila ( 467) 1100 194.8 4.3e-47 gi|170284921|gb|AAI61012.1| Mex3c protein [Xenopus ( 442) 1095 193.9 7.4e-47 gi|149064591|gb|EDM14794.1| ring finger and KH dom ( 464) 1095 194.0 7.7e-47 gi|194678156|ref|XP_607763.4| PREDICTED: mex-3 hom ( 492) 1095 194.0 8e-47 gi|89266802|emb|CAJ83991.1| ring finger and KH dom ( 493) 1095 194.0 8e-47 gi|148922375|gb|AAI46417.1| Mex-3 homolog C (C. el ( 464) 1094 193.8 8.6e-47 gi|194214683|ref|XP_001916808.1| PREDICTED: mex-3 ( 477) 1094 193.8 8.8e-47 gi|148677615|gb|EDL09562.1| mCG51389 [Mus musculus ( 463) 1093 193.6 9.7e-47 gi|116138500|gb|AAI25428.1| Mex3 homolog C (C. ele ( 464) 1093 193.6 9.7e-47 gi|194034998|ref|XP_001928390.1| PREDICTED: simila ( 655) 1094 193.9 1.1e-46 gi|134047827|sp|Q5U5Q3.3|MEX3C_HUMAN RecName: Full ( 659) 1094 193.9 1.1e-46 gi|134047828|sp|Q05A36.2|MEX3C_MOUSE RecName: Full ( 652) 1093 193.8 1.2e-46 gi|189518761|ref|XP_694381.3| PREDICTED: similar t ( 533) 1032 183.5 1.2e-43 gi|210104283|gb|EEA52308.1| hypothetical protein B ( 488) 1031 183.3 1.3e-43 gi|189516308|ref|XP_695633.3| PREDICTED: similar t ( 433) 1020 181.4 4.3e-43 gi|109134052|ref|XP_001088787.1| PREDICTED: simila ( 148) 1013 179.8 4.5e-43 gi|157742899|gb|AAI53821.1| Unknown (protein for I ( 246) 978 174.2 3.7e-41 gi|126307817|ref|XP_001374543.1| PREDICTED: simila ( 527) 977 174.3 7.2e-41 gi|194665278|ref|XP_875573.2| PREDICTED: similar t ( 520) 967 172.6 2.3e-40 >>gi|134047829|sp|Q86XN8.3|MEX3D_HUMAN RecName: Full=RNA (651 aa) initn: 3548 init1: 3548 opt: 3548 Z-score: 3210.0 bits: 603.9 E(): 4.3e-170 Smith-Waterman score: 3548; 100.000% identity (100.000% similar) in 515 aa overlap (1-515:137-651) 10 20 30 KIAA20 PPPRPSPPDVFAGFAPHPAALGPPTLLADQ :::::::::::::::::::::::::::::: gi|134 PEAGAPPTLAPAVAPGSLPLLDPNASPPPPPPPRPSPPDVFAGFAPHPAALGPPTLLADQ 110 120 130 140 150 160 40 50 60 70 80 90 KIAA20 MSVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 MSVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 170 180 190 200 210 220 100 110 120 130 140 150 KIAA20 TGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVPYRVVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 TGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVPYRVVG 230 240 250 260 270 280 160 170 180 190 200 210 KIAA20 LVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 LVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFT 290 300 310 320 330 340 220 230 240 250 260 270 KIAA20 DAGPDSDFHANGTDVCLDLLGAAASLWAKTPNQGRRPPTATAGLRGDTALGAPSAPEAFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 DAGPDSDFHANGTDVCLDLLGAAASLWAKTPNQGRRPPTATAGLRGDTALGAPSAPEAFY 350 360 370 380 390 400 280 290 300 310 320 330 KIAA20 AGSRGGPSVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAAPDDCDFGFDFDFLALDLTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 AGSRGGPSVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAAPDDCDFGFDFDFLALDLTV 410 420 430 440 450 460 340 350 360 370 380 390 KIAA20 PAAATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSGAGTPRHSPTLPEPGGLRLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 PAAATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSGAGTPRHSPTLPEPGGLRLE 470 480 490 500 510 520 400 410 420 430 440 450 KIAA20 LPLSRRGAPDPVGALSWRPPQGPVSFPGGAAFSTATSLPSSPAAAACAPLDSGASENSRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 LPLSRRGAPDPVGALSWRPPQGPVSFPGGAAFSTATSLPSSPAAAACAPLDSGASENSRK 530 540 550 560 570 580 460 470 480 490 500 510 KIAA20 PPSASSAPALARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 PPSASSAPALARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQA 590 600 610 620 630 640 KIAA20 IHIFS ::::: gi|134 IHIFS 650 >>gi|114674462|ref|XP_524036.2| PREDICTED: ring finger a (740 aa) initn: 3514 init1: 2183 opt: 3486 Z-score: 3153.3 bits: 593.6 E(): 6.1e-167 Smith-Waterman score: 3486; 99.025% identity (99.415% similar) in 513 aa overlap (1-513:213-723) 10 20 30 KIAA20 PPPRPSPPDVFAGFAPHPAALGPPTLLADQ :::::::::::::::::::::::::::::: gi|114 ENTPSFRNILSDRAIPEQDSAFCTTSPPPPPPPRPSPPDVFAGFAPHPAALGPPTLLADQ 190 200 210 220 230 240 40 50 60 70 80 90 KIAA20 MSVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MSVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIV 250 260 270 280 290 300 100 110 120 130 140 150 KIAA20 TGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVPYRVVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVPYRVVG 310 320 330 340 350 360 160 170 180 190 200 210 KIAA20 LVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFT 370 380 390 400 410 420 220 230 240 250 260 270 KIAA20 DAGPDSDFHANGTDVCLDLLGAAASLWAKTPNQGRRPPTATAGLRGDTALGAPSAPEAFY :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: gi|114 DAGPDSDFHANGTDVCLDLLGAAASLWAKTPNPGRRPPTATAGLRGDTALGAPSAPEAFY 430 440 450 460 470 480 280 290 300 310 320 330 KIAA20 AGSRGGPSVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAAPDDCDFGFDFDFLALDLTV :::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: gi|114 AGSRGGPSVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAAPDDCDFGFD--FLALDLTV 490 500 510 520 530 540 340 350 360 370 380 390 KIAA20 PAAATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSGAGTPRHSPTLPEPGGLRLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PAAATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSGAGTPRHSPTLPEPGGLRLE 550 560 570 580 590 600 400 410 420 430 440 450 KIAA20 LPLSRRGAPDPVGALSWRPPQGPVSFPGGAAFSTATSLPSSPAAAACAPLDSGASENSRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LPLSRRGAPDPVGALSWRPPQGPVSFPGGAAFSTATSLPSSPAAAACAPLDSGASENSRK 610 620 630 640 650 660 460 470 480 490 500 510 KIAA20 PPSASSAPALARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PPSASSAPALARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQA 670 680 690 700 710 720 KIAA20 IHIFS :.. gi|114 IRVETETPQPGGASALQRQY 730 740 >>gi|118196851|gb|AAI13385.1| MEX3D protein [Homo sapien (489 aa) initn: 3427 init1: 3233 opt: 3233 Z-score: 2927.2 bits: 551.2 E(): 2.4e-154 Smith-Waterman score: 3233; 99.576% identity (100.000% similar) in 472 aa overlap (42-513:1-472) 20 30 40 50 60 70 KIAA20 AGFAPHPAALGPPTLLADQMSVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRA :::::::::::::::::::::::::::::: gi|118 NMTECVPVPSSEHVAEIVGRQGCKIKALRA 10 20 30 80 90 100 110 120 130 KIAA20 KTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 KTNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGP 40 50 60 70 80 90 140 150 160 170 180 190 KIAA20 PNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 PNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENV 100 110 120 130 140 150 200 210 220 230 240 250 KIAA20 DRAREEIEAHITLRTGAFTDAGPDSDFHANGTDVCLDLLGAAASLWAKTPNQGRRPPTAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 DRAREEIEAHITLRTGAFTDAGPDSDFHANGTDVCLDLLGAAASLWAKTPNQGRRPPTAT 160 170 180 190 200 210 260 270 280 290 300 310 KIAA20 AGLRGDTALGAPSAPEAFYAGSRGGPSVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 AGLRGDTALGAPSAPEAFYAGSRGGPSVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAA 220 230 240 250 260 270 320 330 340 350 360 370 KIAA20 PDDCDFGFDFDFLALDLTVPAAATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 PDDCDFGFDFDFLALDLTVPAAATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSG 280 290 300 310 320 330 380 390 400 410 420 430 KIAA20 AGTPRHSPTLPEPGGLRLELPLSRRGAPDPVGALSWRPPQGPVSFPGGAAFSTATSLPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 AGTPRHSPTLPEPGGLRLELPLSRRGAPDPVGALSWRPPQGPVSFPGGAAFSTATSLPSS 340 350 360 370 380 390 440 450 460 470 480 490 KIAA20 PAAAACAPLDSGASENSRKPPSASSAPALARECVVCAEGEVMAALVPCGHNLFCMDCAVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 PAAAACAPLDSGASENSRKPPSASSAPALARECVVCAEGEVMAALVPCGHNLFCMDCAVR 400 410 420 430 440 450 500 510 KIAA20 ICGKSEPECPACRTPATQAIHIFS ::::::::::::::::::::.. gi|118 ICGKSEPECPACRTPATQAIRVETETPQPGGASALQRQY 460 470 480 >>gi|33317618|gb|AAQ04763.1|AF458084_1 bcl-2 ARE RNA bin (488 aa) initn: 3420 init1: 3226 opt: 3226 Z-score: 2920.9 bits: 550.0 E(): 5.4e-154 Smith-Waterman score: 3226; 99.575% identity (100.000% similar) in 471 aa overlap (43-513:1-471) 20 30 40 50 60 70 KIAA20 GFAPHPAALGPPTLLADQMSVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAK :::::::::::::::::::::::::::::: gi|333 MTECVPVPSSEHVAEIVGRQGCKIKALRAK 10 20 30 80 90 100 110 120 130 KIAA20 TNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|333 TNTYIKTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPP 40 50 60 70 80 90 140 150 160 170 180 190 KIAA20 NLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|333 NLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVD 100 110 120 130 140 150 200 210 220 230 240 250 KIAA20 RAREEIEAHITLRTGAFTDAGPDSDFHANGTDVCLDLLGAAASLWAKTPNQGRRPPTATA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|333 RAREEIEAHITLRTGAFTDAGPDSDFHANGTDVCLDLLGAAASLWAKTPNQGRRPPTATA 160 170 180 190 200 210 260 270 280 290 300 310 KIAA20 GLRGDTALGAPSAPEAFYAGSRGGPSVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|333 GLRGDTALGAPSAPEAFYAGSRGGPSVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAAP 220 230 240 250 260 270 320 330 340 350 360 370 KIAA20 DDCDFGFDFDFLALDLTVPAAATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|333 DDCDFGFDFDFLALDLTVPAAATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSGA 280 290 300 310 320 330 380 390 400 410 420 430 KIAA20 GTPRHSPTLPEPGGLRLELPLSRRGAPDPVGALSWRPPQGPVSFPGGAAFSTATSLPSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|333 GTPRHSPTLPEPGGLRLELPLSRRGAPDPVGALSWRPPQGPVSFPGGAAFSTATSLPSSP 340 350 360 370 380 390 440 450 460 470 480 490 KIAA20 AAAACAPLDSGASENSRKPPSASSAPALARECVVCAEGEVMAALVPCGHNLFCMDCAVRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|333 AAAACAPLDSGASENSRKPPSASSAPALARECVVCAEGEVMAALVPCGHNLFCMDCAVRI 400 410 420 430 440 450 500 510 KIAA20 CGKSEPECPACRTPATQAIHIFS :::::::::::::::::::.. gi|333 CGKSEPECPACRTPATQAIRVETETPQPGGASALQRQY 460 470 480 >>gi|76622862|ref|XP_583835.2| PREDICTED: similar to RNA (473 aa) initn: 1966 init1: 1363 opt: 2693 Z-score: 2439.8 bits: 460.9 E(): 3.4e-127 Smith-Waterman score: 2693; 86.026% identity (94.323% similar) in 458 aa overlap (63-515:18-473) 40 50 60 70 80 90 KIAA20 VIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTG :::::::::::::::::::::::::::::: gi|766 MEEMARDQEPWKGCQMLGCKIKALRAKTNTYIKTPVRGEEPVFIVTG 10 20 30 40 100 110 120 130 140 150 KIAA20 RKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVPYRVVGLV ::::::::::::::::::::.:::::::::::::.::::::::::::::::::::::::: gi|766 RKEDVEMAKREILSAAEHFSVIRATRSKAGGLPGTAQGPPNLPGQTTIQVRVPYRVVGLV 50 60 70 80 90 100 160 170 180 190 200 210 KIAA20 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFTDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|766 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFTDA 110 120 130 140 150 160 220 230 240 250 260 270 KIAA20 GPDSDFHANGTDVCLDLLGAAASLWAKTPNQGRRPPTATAGLRGDTALGAPSAPEAFYAG .::::::.::::::::::::::.::::.:: :::::. ::.::::::::::..::.:::. gi|766 SPDSDFHSNGTDVCLDLLGAAAGLWAKAPNPGRRPPAPTASLRGDTALGAPGGPESFYAA 170 180 190 200 210 220 280 290 300 310 320 KIAA20 SRGGP----SVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAAPDDCDFGFDFDFLALDL ::::: .::: ::::::: ::::::.::..:::::.: : .:::::::: ::::: gi|766 SRGGPPVPVQVPDAGPASPYSTSGNGGFTFGGDGPGAPTGPPALEDCDFGFDF--LALDL 230 240 250 260 270 280 330 340 350 360 370 380 KIAA20 TVPAAATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSGAGTPRHSPTLPEPGGLR :::.:::::::::::.:::::.:::.:::::.::: :::::::.::::::::::::::: gi|766 TVPTAATIWAPFERATPLPAFGGCSAVNGAPAPPAPGARRSSGTGTPRHSPTLPEPGGLG 290 300 310 320 330 340 390 400 410 420 430 440 KIAA20 LELPLSRRGAPDPVGALSWRPPQGPV-SFPGGAAFSTATSLPSSPAAAACAPLDSGASEN :::::.:: .::::::: :::::: . :: ..:.:::::::::: .:..:. :::.: :: gi|766 LELPLARRPTPDPVGALPWRPPQGSLTSFSSSASFSTATSLPSSSSASSCSALDSSAPEN 350 360 370 380 390 400 450 460 470 480 490 500 KIAA20 SRKPPSASSAPALARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPA .::::.: . ::::::::::::::::::::::::::::::::::::::::::::::::: gi|766 GRKPPAAPAPAALARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPA 410 420 430 440 450 460 510 KIAA20 TQAIHIFS :::::::: gi|766 TQAIHIFS 470 >>gi|109480235|ref|XP_234921.4| PREDICTED: similar to RI (697 aa) initn: 2932 init1: 1995 opt: 2580 Z-score: 2335.6 bits: 442.2 E(): 2.1e-121 Smith-Waterman score: 2955; 82.830% identity (92.075% similar) in 530 aa overlap (3-515:172-697) 10 20 30 KIAA20 PPPRPSPPDVFAGFAPHPAALGPPTLLADQMS ::::::::::.:::::::::: ::::.:.. gi|109 LTPSVTLAPTMAVASPVAPGGLPLLDPDVSPRPSPPDVFASFAPHPAALGPSTLLAEQLN 150 160 170 180 190 200 40 50 60 70 80 90 KIAA20 VIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTG 210 220 230 240 250 260 100 110 120 130 140 150 KIAA20 RKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVPYRVVGLV ::::::::::::::::::::.::::::::::: ::. ::::::::::::::::::::::: gi|109 RKEDVEMAKREILSAAEHFSLIRATRSKAGGLSGATPGPPNLPGQTTIQVRVPYRVVGLV 270 280 290 300 310 320 160 170 180 190 200 210 KIAA20 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFTDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFTDA 330 340 350 360 370 380 220 230 240 250 260 270 KIAA20 GPDSDFHANGTDVCLDLLGAAASLWAKTPNQGRRPPTATAGLRGDTALGAPSAPEAFYAG :::::::::::::::::::::::::::.:. ::::::::.:::::.:::: :.:: ::.: gi|109 GPDSDFHANGTDVCLDLLGAAASLWAKAPHPGRRPPTATGGLRGDNALGAASTPEPFYVG 390 400 410 420 430 440 280 290 300 310 320 330 KIAA20 SRGGPSVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAAPDDCDFGFDFDFLALDLTVPA :::::..:::.:.:::.:::::::.::..:::::.::..:.::::::: :::::::::: gi|109 SRGGPALPDPSPSSPYGGSGNGGFTFGGDGPGAPTGTTTPEDCDFGFD--FLALDLTVPA 450 460 470 480 490 340 350 360 370 380 KIAA20 AATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSGAG----TPRHSPTLPEPGGLR .::::::::::::::::::: ::::::. : .:.:::::.: :::::::::::::: gi|109 TATIWAPFERAAPLPAFSGCPTVNGAPAQPNTGTRRSSGGGGAATTPRHSPTLPEPGGLS 500 510 520 530 540 550 390 400 410 420 430 440 KIAA20 LELPLSRRGAPDPVGALSWRPPQGPVS-FPGGAAFSTATSLPSSPAAAACAPLDSGASEN :::::.:::.::::::. :::::. . : :...:::. ::::. :.. .:. ::. gi|109 LELPLARRGVPDPVGAVPWRPPQSTLPPFSGSTTFSTTPSLPSTTPASS--TMDTVPSEG 560 570 580 590 600 610 450 460 470 480 490 KIAA20 SRKPP------SASSA-P-----ALARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGK ..:: :::.: : :::::::::.:::.::::::::::::::::::::::: gi|109 NHKPSTTAANSSASAAAPGPPAAALARECVVCSEGEAMAALVPCGHNLFCMDCAVRICGK 620 630 640 650 660 670 500 510 KIAA20 SEPECPACRTPATQAIHIFS :::::::::::::::::::: gi|109 SEPECPACRTPATQAIHIFS 680 690 >>gi|145651818|ref|NP_941017.2| ring finger and KH domai (718 aa) initn: 2608 init1: 1981 opt: 2555 Z-score: 2312.9 bits: 438.0 E(): 4e-120 Smith-Waterman score: 2932; 82.420% identity (92.060% similar) in 529 aa overlap (3-515:194-718) 10 20 30 KIAA20 PPPRPSPPDVFAGFAPHPAALGPPTLLADQMS ::::::::::.:::::::::: ::::.:.. gi|145 LTPSVTLAPTMAVASSVAPGGLPLLDPDVSPRPSPPDVFASFAPHPAALGPSTLLAEQLN 170 180 190 200 210 220 40 50 60 70 80 90 KIAA20 VIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|145 VIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTG 230 240 250 260 270 280 100 110 120 130 140 150 KIAA20 RKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVPYRVVGLV ::::::::::::::::::::.::::::::::: ::. ::::::::::::::::::::::: gi|145 RKEDVEMAKREILSAAEHFSLIRATRSKAGGLSGATPGPPNLPGQTTIQVRVPYRVVGLV 290 300 310 320 330 340 160 170 180 190 200 210 KIAA20 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFTDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|145 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFTDS 350 360 370 380 390 400 220 230 240 250 260 270 KIAA20 GPDSDFHANGTDVCLDLLGAAASLWAKTPNQGRRPPTATAGLRGDTALGAPSAPEAFYAG :::::::::::::::::::::::::::.:. :::::.::.:::::.:::: :.:: ::.: gi|145 GPDSDFHANGTDVCLDLLGAAASLWAKAPHPGRRPPAATGGLRGDNALGAASTPEPFYVG 410 420 430 440 450 460 280 290 300 310 320 330 KIAA20 SRGGPSVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAAPDDCDFGFDFDFLALDLTVPA ::::: .:::.:.:::.:::::::.::..::.::.:::.:.::::::: :::::::::: gi|145 SRGGPPLPDPSPSSPYGGSGNGGFTFGGDGPSAPTGTATPEDCDFGFD--FLALDLTVPA 470 480 490 500 510 520 340 350 360 370 380 KIAA20 AATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSGAG---TPRHSPTLPEPGGLRL .::::::::::::::::::: .:::::. : .:.:::::.: :::::::::::::: : gi|145 TATIWAPFERAAPLPAFSGCPAVNGAPAQPNTGTRRSSGGGAATTPRHSPTLPEPGGLSL 530 540 550 560 570 580 390 400 410 420 430 440 KIAA20 ELPLSRRGAPDPVGALSWRPPQGPVS-FPGGAAFSTATSLPSSPAAAACAPLDSGASENS ::::.::..::::::. :::::. . : :...:::. ::::. :.. ::. ::.. gi|145 ELPLARRSVPDPVGAVPWRPPQSALPPFSGSTTFSTTPSLPSTTLASS--TLDTVPSEGN 590 600 610 620 630 450 460 470 480 490 KIAA20 RKPP------SASSA-P-----ALARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKS .:: :::.: : :::::::::.:::.:::::::::::::::::::::::: gi|145 HKPSTTAANSSASTAAPGPPSAALARECVVCSEGEAMAALVPCGHNLFCMDCAVRICGKS 640 650 660 670 680 690 500 510 KIAA20 EPECPACRTPATQAIHIFS ::::::::::::::::::: gi|145 EPECPACRTPATQAIHIFS 700 710 >>gi|134034170|sp|Q3UE17.2|MEX3D_MOUSE RecName: Full=RNA (643 aa) initn: 1712 init1: 1318 opt: 2538 Z-score: 2298.2 bits: 435.2 E(): 2.6e-119 Smith-Waterman score: 2915; 82.231% identity (91.871% similar) in 529 aa overlap (3-515:120-643) 10 20 30 KIAA20 PPPRPSPPDVFAGFAPHPAALGPPTLLADQMS ::::::::::.:::::::::: ::::.:.. gi|134 PPDELEVAVAPPVTASVAPGGLPLLDPDVSPRPSPPDVFASFAPHPAALGPSTLLAEQLN 90 100 110 120 130 140 40 50 60 70 80 90 KIAA20 VIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 VIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTG 150 160 170 180 190 200 100 110 120 130 140 150 KIAA20 RKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVPYRVVGLV ::::::::::::::: ::::.::::::::::: ::. ::::::::::::::::::::::: gi|134 RKEDVEMAKREILSA-EHFSLIRATRSKAGGLSGATPGPPNLPGQTTIQVRVPYRVVGLV 210 220 230 240 250 260 160 170 180 190 200 210 KIAA20 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFTDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|134 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFTDS 270 280 290 300 310 320 220 230 240 250 260 270 KIAA20 GPDSDFHANGTDVCLDLLGAAASLWAKTPNQGRRPPTATAGLRGDTALGAPSAPEAFYAG :::::::::::::::::::::::::::.:. :::::.::.:::::.:::: :.:: ::.: gi|134 GPDSDFHANGTDVCLDLLGAAASLWAKAPHPGRRPPAATGGLRGDNALGAASTPEPFYVG 330 340 350 360 370 380 280 290 300 310 320 330 KIAA20 SRGGPSVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAAPDDCDFGFDFDFLALDLTVPA ::::: .:::.:.:::.:::::::.::..::.::.:::.:.::::::: :::::::::: gi|134 SRGGPPLPDPSPSSPYGGSGNGGFTFGGDGPSAPTGTATPEDCDFGFD--FLALDLTVPA 390 400 410 420 430 440 340 350 360 370 380 KIAA20 AATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSGAG---TPRHSPTLPEPGGLRL .::::::::::::::::::: .:::::. : .:.:::::.: :::::::::::::: : gi|134 TATIWAPFERAAPLPAFSGCPAVNGAPAQPNTGTRRSSGGGAATTPRHSPTLPEPGGLSL 450 460 470 480 490 500 390 400 410 420 430 440 KIAA20 ELPLSRRGAPDPVGALSWRPPQGPVS-FPGGAAFSTATSLPSSPAAAACAPLDSGASENS ::::.::..::::::. :::::. . : :...:::. ::::. :.. ::. ::.. gi|134 ELPLARRSVPDPVGAVPWRPPQSALPPFSGSTTFSTTPSLPSTTLASS--TLDTVPSEGN 510 520 530 540 550 560 450 460 470 480 490 KIAA20 RKPP------SASSA-P-----ALARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKS .:: :::.: : :::::::::.:::.:::::::::::::::::::::::: gi|134 HKPSTTAANSSASTAAPGPPSAALARECVVCSEGEAMAALVPCGHNLFCMDCAVRICGKS 570 580 590 600 610 620 500 510 KIAA20 EPECPACRTPATQAIHIFS ::::::::::::::::::: gi|134 EPECPACRTPATQAIHIFS 630 640 >>gi|73987544|ref|XP_855104.1| PREDICTED: similar to RIN (551 aa) initn: 2406 init1: 1947 opt: 2237 Z-score: 2027.3 bits: 384.8 E(): 3.2e-104 Smith-Waterman score: 2611; 82.143% identity (89.496% similar) in 476 aa overlap (63-515:87-551) 40 50 60 70 80 90 KIAA20 VIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTG :::::::::::::::::::::::::::::: gi|739 FLTLWNVARKPLGGLYGALAARTSSQDKLWGCKIKALRAKTNTYIKTPVRGEEPVFIVTG 60 70 80 90 100 110 100 110 120 130 140 150 KIAA20 RKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVPYRVVGLV ::::::::::::::::::::.:::::::::::::.::::::::::::::::::::::::: gi|739 RKEDVEMAKREILSAAEHFSVIRATRSKAGGLPGTAQGPPNLPGQTTIQVRVPYRVVGLV 120 130 140 150 160 170 160 170 180 190 200 210 KIAA20 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFTDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFTDA 180 190 200 210 220 230 220 230 240 250 260 270 KIAA20 GPDSDFHANGTDVCLDLLGAAASLWAKTPNQGRRPPTATAGLRGDTALGAPSAPEAFYAG :::::::::::::::::::.::.::::.:: :::::. ::.:::: :::::..::::::: gi|739 GPDSDFHANGTDVCLDLLGTAAGLWAKAPNPGRRPPAPTASLRGDPALGAPGGPEAFYAG 240 250 260 270 280 290 280 290 300 310 320 330 KIAA20 SRGGPSVPDPGPASPYSG--SGNGGFAFGAEGPGAPVGTAAPDDCDFGFDFDFLALDLTV .:::: ::. ::.:::.: ::::::.::..:::::.: ::.:::::::: ::::::: gi|739 GRGGPPVPEAGPTSPYGGGGSGNGGFTFGGDGPGAPAGPPAPEDCDFGFDF--LALDLTV 300 310 320 330 340 350 340 350 360 370 380 390 KIAA20 PAAATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSGAGTPRHSPTLPEPGGLRLE :::::::::::::::::::.:::.:::::.::: :::::::.:.::::::::::::: :: gi|739 PAAATIWAPFERAAPLPAFGGCSAVNGAPAPPAPGARRSSGTGSPRHSPTLPEPGGLALE 360 370 380 390 400 410 400 410 420 430 440 KIAA20 LPLSRR-GAPDPVGALSWRPPQGPV-SFPGGAAFSTATSLPSSPAAAACAPLDSGASENS :::.:: : :::::::.::: :. . :::: ..::.: : ::::: ::::.. gi|739 LPLARRAGPPDPVGALAWRPSQSALASFPG-TGFSAA--------APPCAPLDPGASEGG 420 430 440 450 460 450 460 470 480 KIAA20 RKPPSASSA-------------------PALARECVVCAEGEVMAALVPCGHNLFCMDCA :::: :.:. ::::::::::::::.::::::::::::::::: gi|739 RKPPPAASSSSSSSSSSSSAAPPPAAPGPALARECVVCAEGEAMAALVPCGHNLFCMDCA 470 480 490 500 510 520 490 500 510 KIAA20 VRICGKSEPECPACRTPATQAIHIFS :::::::::::::::::::::::::: gi|739 VRICGKSEPECPACRTPATQAIHIFS 530 540 550 >>gi|74207940|dbj|BAE29094.1| unnamed protein product [M (427 aa) initn: 1977 init1: 1977 opt: 2102 Z-score: 1906.8 bits: 362.2 E(): 1.6e-97 Smith-Waterman score: 2102; 89.796% identity (97.376% similar) in 343 aa overlap (3-345:87-427) 10 20 30 KIAA20 PPPRPSPPDVFAGFAPHPAALGPPTLLADQMS ::::::::::.:::::::::: ::::.:.. gi|742 LTPSVTLAPTMAVASSVAPGGLPLLDPDVSPRPSPPDVFASFAPHPAALGPSTLLAEQLN 60 70 80 90 100 110 40 50 60 70 80 90 KIAA20 VIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTG 120 130 140 150 160 170 100 110 120 130 140 150 KIAA20 RKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQTTIQVRVPYRVVGLV ::::::::::::::::::::.::::::::::: ::. ::::::::::::::::::::::: gi|742 RKEDVEMAKREILSAAEHFSLIRATRSKAGGLSGATPGPPNLPGQTTIQVRVPYRVVGLV 180 190 200 210 220 230 160 170 180 190 200 210 KIAA20 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFTDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|742 VGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREEIEAHITLRTGAFTDS 240 250 260 270 280 290 220 230 240 250 260 270 KIAA20 GPDSDFHANGTDVCLDLLGAAASLWAKTPNQGRRPPTATAGLRGDTALGAPSAPEAFYAG :::::::::::::::::::::::::::.:. :::::.::.:::::.:::: :.:: ::.: gi|742 GPDSDFHANGTDVCLDLLGAAASLWAKAPHPGRRPPAATGGLRGDNALGAASTPEPFYVG 300 310 320 330 340 350 280 290 300 310 320 330 KIAA20 SRGGPSVPDPGPASPYSGSGNGGFAFGAEGPGAPVGTAAPDDCDFGFDFDFLALDLTVPA ::::: .:::.:.:::.:::::::.::..::.::.:::.:.:::::::: ::::::::: gi|742 SRGGPPLPDPSPSSPYGGSGNGGFTFGGDGPSAPTGTATPEDCDFGFDF--LALDLTVPA 360 370 380 390 400 410 340 350 360 370 380 390 KIAA20 AATIWAPFERAAPLPAFSGCSTVNGAPGPPAAGARRSSGAGTPRHSPTLPEPGGLRLELP .:::::::::::: gi|742 TATIWAPFERAAP 420 515 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Fri Mar 6 10:52:51 2009 done: Fri Mar 6 10:56:55 2009 Total Scan time: 1521.470 Total Display time: 0.210 Function used was FASTA [version 34.26.5 April 26, 2007]