# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ef03841.fasta.huge -Q ../query/KIAA2031.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
KIAA2031, 515 aa
vs ./tmplib.25089 library
1986990 residues in 2037 sequences
Expectation_n fit: rho(ln(x))= 7.8593+/-0.00897; mu= 4.1505+/- 0.610
mean_var=322.6562+/-76.674, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40
Lambda= 0.071401
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 37, opt: 25, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2037)
KIAA2009 ( 501 res) fj05611 ( 501) 955 111.7 1.2e-25
>>KIAA2009 ( 501 res) fj05611 (501 aa)
initn: 1258 init1: 917 opt: 955 Z-score: 552.1 bits: 111.7 E(): 1.2e-25
Smith-Waterman score: 1363; 50.391% identity (68.359% similar) in 512 aa overlap (48-515:8-501)
20 30 40 50 60 70
KIAA20 PAALGPPTLLADQMSVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYI
:.::: . .:: ::::::::::::::
KIAA20 WACLSLSPTPSS--APWFVG---CKIKALRAKTNTYI
10 20 30
80 90 100 110 120 130
KIAA20 KTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQ
:::::::::::.:::::::: ::.:::.:::::::.:::.:.: .: ::. ::::::::
KIAA20 KTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNKNTALNGAVPGPPNLPGQ
40 50 60 70 80 90
140 150 160 170 180 190
KIAA20 TTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREE
::::::::::::::::::::::::::::.::::::::.::::::: ::::::::::::::
KIAA20 TTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREE
100 110 120 130 140 150
200 210 220 230 240
KIAA20 IEAHITLRTGAFTDAGPDSDFHANGTDVCLDLLGAAA-----SLWAK-----TPNQGRRP
:::::.::::.. . ..::::::::: .:: ... :::.: ::. ::.:
KIAA20 IEAHIALRTGGIIELTDENDFHANGTDVGFDLHHGSGGSGPGSLWSKPTPSITPTPGRKP
160 170 180 190 200 210
250 260 270 280 290
KIAA20 PTATAGLRGDTA--LGAPSAPEAFYAGSRGGPSVPD-------PGPASPYSGSGNG----
.. :.:.. ::. :. : .:. .. .. . :.:: .. .::.
KIAA20 ---FSSYRNDSSSSLGSASTDSYFGGGTSSSAAATQRLADYSPPSPALSFAHNGNNNNNG
220 230 240 250 260
300 310 320 330 340
KIAA20 -GFAFGAEGPGAPVGTAAPDDC-DFGFDFDFLALDLTVPAAATIWAPFERA---APL-PA
:... : :. ... .:: : .. :: :.: ::: :::. .: :.
KIAA20 NGYTYTA---GGEASVPSPDGCPELQPTFD--PAPAPPPGAPLIWAQFERSPGGGPAAPV
270 280 290 300 310 320
350 360 370 380 390 400
KIAA20 FSGCSTVNGAPGP------PAAGARRSSGA--GTPRHSPTLPEPGGLRLELPLSRRGAPD
:.::. .. . :..:: :.: : : : . :: :: ::
KIAA20 SSSCSSSASSSASSSSVVFPGGGASAPSNANLGLLVHRRLHPGTSCPRLSPPLHM--AP-
330 340 350 360 370 380
410 420 430 440 450
KIAA20 PVGALSWRPPQGPVSFPGGAAFSTATSLPSSPAA-AACAPLD-SGASENSRKPPSASSAP
:: . . : :::.... :. . : . : : ::.: .: . :.::.
KIAA20 --GAGEHHLARRVRSDPGGGGLAYAAYANGLGAQLPGLQPSDTSGSSSSSSSSSSSSSSS
390 400 410 420 430
460 470 480 490 500 510
KIAA20 AL-----ARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQAIHI
. .:.: :: :.::.:::::::::::::.:: ::: :::::::.:.: .::::.:
KIAA20 SGLRRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRI
440 450 460 470 480 490
KIAA20 FS
::
KIAA20 FS
500
515 residues in 1 query sequences
1986990 residues in 2037 library sequences
Scomplib [34.26]
start: Thu Dec 18 15:26:21 2008 done: Thu Dec 18 15:26:22 2008
Total Scan time: 0.450 Total Display time: 0.020
Function used was FASTA [version 34.26.5 April 26, 2007]