# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ef03841.fasta.huge -Q ../query/KIAA2031.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA2031, 515 aa vs ./tmplib.25089 library 1986990 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 7.8593+/-0.00897; mu= 4.1505+/- 0.610 mean_var=322.6562+/-76.674, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.071401 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA2009 ( 501 res) fj05611 ( 501) 955 111.7 1.2e-25 >>KIAA2009 ( 501 res) fj05611 (501 aa) initn: 1258 init1: 917 opt: 955 Z-score: 552.1 bits: 111.7 E(): 1.2e-25 Smith-Waterman score: 1363; 50.391% identity (68.359% similar) in 512 aa overlap (48-515:8-501) 20 30 40 50 60 70 KIAA20 PAALGPPTLLADQMSVIGSRKKSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYI :.::: . .:: :::::::::::::: KIAA20 WACLSLSPTPSS--APWFVG---CKIKALRAKTNTYI 10 20 30 80 90 100 110 120 130 KIAA20 KTPVRGEEPVFIVTGRKEDVEMAKREILSAAEHFSIIRATRSKAGGLPGAAQGPPNLPGQ :::::::::::.:::::::: ::.:::.:::::::.:::.:.: .: ::. :::::::: KIAA20 KTPVRGEEPVFVVTGRKEDVAMARREIISAAEHFSMIRASRNKNTALNGAVPGPPNLPGQ 40 50 60 70 80 90 140 150 160 170 180 190 KIAA20 TTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGMPENVDRAREE ::::::::::::::::::::::::::::.::::::::.::::::: :::::::::::::: KIAA20 TTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSRDKEPVFEVTGMPENVDRAREE 100 110 120 130 140 150 200 210 220 230 240 KIAA20 IEAHITLRTGAFTDAGPDSDFHANGTDVCLDLLGAAA-----SLWAK-----TPNQGRRP :::::.::::.. . ..::::::::: .:: ... :::.: ::. ::.: KIAA20 IEAHIALRTGGIIELTDENDFHANGTDVGFDLHHGSGGSGPGSLWSKPTPSITPTPGRKP 160 170 180 190 200 210 250 260 270 280 290 KIAA20 PTATAGLRGDTA--LGAPSAPEAFYAGSRGGPSVPD-------PGPASPYSGSGNG---- .. :.:.. ::. :. : .:. .. .. . :.:: .. .::. KIAA20 ---FSSYRNDSSSSLGSASTDSYFGGGTSSSAAATQRLADYSPPSPALSFAHNGNNNNNG 220 230 240 250 260 300 310 320 330 340 KIAA20 -GFAFGAEGPGAPVGTAAPDDC-DFGFDFDFLALDLTVPAAATIWAPFERA---APL-PA :... : :. ... .:: : .. :: :.: ::: :::. .: :. KIAA20 NGYTYTA---GGEASVPSPDGCPELQPTFD--PAPAPPPGAPLIWAQFERSPGGGPAAPV 270 280 290 300 310 320 350 360 370 380 390 400 KIAA20 FSGCSTVNGAPGP------PAAGARRSSGA--GTPRHSPTLPEPGGLRLELPLSRRGAPD :.::. .. . :..:: :.: : : : . :: :: :: KIAA20 SSSCSSSASSSASSSSVVFPGGGASAPSNANLGLLVHRRLHPGTSCPRLSPPLHM--AP- 330 340 350 360 370 380 410 420 430 440 450 KIAA20 PVGALSWRPPQGPVSFPGGAAFSTATSLPSSPAA-AACAPLD-SGASENSRKPPSASSAP :: . . : :::.... :. . : . : : ::.: .: . :.::. KIAA20 --GAGEHHLARRVRSDPGGGGLAYAAYANGLGAQLPGLQPSDTSGSSSSSSSSSSSSSSS 390 400 410 420 430 460 470 480 490 500 510 KIAA20 AL-----ARECVVCAEGEVMAALVPCGHNLFCMDCAVRICGKSEPECPACRTPATQAIHI . .:.: :: :.::.:::::::::::::.:: ::: :::::::.:.: .::::.: KIAA20 SGLRRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICEKSEPECPVCHTAVTQAIRI 440 450 460 470 480 490 KIAA20 FS :: KIAA20 FS 500 515 residues in 1 query sequences 1986990 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:26:21 2008 done: Thu Dec 18 15:26:22 2008 Total Scan time: 0.450 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]