hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-19373315/chunk_1/iprscan-20080502-19373315.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA2029 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00209 188.2 7.8e-52 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00209 1/6 386 438 .. 1 66 [] 66.2 4e-15 SM00209 2/6 671 720 .. 1 66 [] 15.5 0.2 SM00209 3/6 727 784 .. 1 66 [] 24.1 0.019 SM00209 4/6 786 845 .. 1 66 [] 25.1 0.01 SM00209 5/6 851 912 .. 1 66 [] 23.9 0.022 SM00209 6/6 926 978 .. 1 66 [] 33.4 3.1e-05 Alignments of top-scoring domains: SM00209: domain 1 of 6, from 386 to 438: score 66.2, E = 4e-15 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg ws+Ws+WSpCS +tCGgG v +R+R c +p+p++ gg KIAA2029 386 WSDWSSWSPCS-RTCGGG-----VSHRSR-----LCTNPKPSH--GG 419 epCs....EtrpCntqpnLqpCp<-* + C+++++ + Cn q +Cp KIAA2029 420 KFCEgstrTLKLCNSQ----KCP 438 SM00209: domain 2 of 6, from 671 to 720: score 15.5, E = 0.2 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg w S+CS v+CGgG ++ +R+ +c + + q++ KIAA2029 671 WAIVR--SECS-VSCGGG----QMTVRE-----GCYRDLKF--QVNM 703 epCs.EtrpCntqpnLqpCp<-* + C + trp ++ pC KIAA2029 704 SFCNpKTRPVTGLV---PCK 720 SM00209: domain 3 of 6, from 727 to 784: score 24.1, E = 0.019 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg ++ + WS+CS +tCGgG ++R + c + + KIAA2029 727 SWSVGNWSACS-RTCGGG-----AQSRPVQ----CTRRVH----YDS 759 epCs..........EtrpCntqpnLqpCp<-* ep + + +++ ++ ++Cn q Cp KIAA2029 760 EPVPaslcpqpapsSRQACNSQ----SCP 784 SM00209: domain 4 of 6, from 786 to 845: score 25.1, E = 0.01 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg ++ ++W +CS tCG+G +r+R +c+s +p+ KIAA2029 786 AWSAGPWAECS-HTCGKG-----WRKRAV----ACKSTNPS---ARA 819 epCs...........EtrpCntqpnLqpCp<-* + ++ ++++++++ ++C +q C+ KIAA2029 820 QLLPdavctsepkprMHEACLLQ----RCH 845 SM00209: domain 5 of 6, from 851 to 912: score 23.9, E = 0.022 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg + s WS+CS vtC +G +++R + c + g KIAA2029 851 QWLVSAWSQCS-VTCERG-----TQKRFLK----CAEKYVS-----G 882 epCs...............EtrpCntqpnLqpCp<-* ++ + +++ ++ ++++ + r+C + pCp KIAA2029 883 KYRElaskkcshlpkpsleLERACAPL----PCP 912 SM00209: domain 6 of 6, from 926 to 978: score 33.4, E = 3.1e-05 *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg + s+WS+C+ ++CGgG v+tR+ + c + +p KIAA2029 926 SWFASPWSQCT-ASCGGG-----VQTRSVQ----CLAGGRP-----A 957 epCs......EtrpCntqpnLqpCp<-* + C +++++ + +Cnt+ Cp KIAA2029 958 SGCLlhqkpsASLACNTH----FCP 978 //