hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-19373315/chunk_1/iprscan-20080502-19373315.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA2029 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05986.4.ls ADAM-TS Spacer 1 190.9 2.8e-54 1 PF05986.4.fs ADAM-TS Spacer 1 189.0 1.1e-53 1 PF00090.9.fs Thrombospondin type 1 domain 121.8 5.1e-36 6 PF00090.9.ls Thrombospondin type 1 domain 108.4 1.9e-29 5 PF01421.9.ls Reprolysin (M12B) family zinc metallopro 85.1 2e-22 1 PF01421.9.fs Reprolysin (M12B) family zinc metallopro 79.3 3.3e-21 2 PF08686.1.fs PLAC (protease and lacunin) domain 56.3 7.8e-15 1 PF08686.1.ls PLAC (protease and lacunin) domain 58.3 2.3e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01421.9.ls 1/1 89 292 .. 1 203 [] 85.1 2e-22 PF01421.9.fs 2/2 151 292 .. 63 203 .] 74.7 5.6e-20 PF00090.9.ls 1/5 387 437 .. 1 55 [] 63.2 8e-16 PF00090.9.fs 1/6 387 437 .. 1 55 [] 61.3 8.7e-18 PF05986.4.ls 1/1 543 655 .. 1 128 [] 190.9 2.8e-54 PF05986.4.fs 1/1 543 655 .. 1 128 [] 189.0 1.1e-53 PF00090.9.ls 2/5 731 783 .. 1 55 [] 6.4 0.0099 PF00090.9.ls 3/5 790 844 .. 1 55 [] 12.2 0.002 PF00090.9.ls 4/5 852 898 .. 1 55 [] 12.6 0.0018 PF00090.9.ls 5/5 925 977 .. 1 55 [] 14.0 0.0012 PF08686.1.ls 1/1 986 1018 .. 1 35 [] 58.3 2.3e-14 PF08686.1.fs 1/1 986 1018 .. 1 35 [] 56.3 7.8e-15 Alignments of top-scoring domains: PF01421.9.ls: domain 1 of 1, from 89 to 292: score 85.1, E = 2e-22 *->rYiELvIVvDhgmytkygsdlnkirqrVhqivNlvNeiYrp.....q +E +VvD++m++ +g ++ i+++V+ i N+v +++++ ++ KIAA2029 89 --VETLVVVDKKMMQNHG--HENITTYVLTILNMVSALFKDgtiggN 131 LNIrVv.LvgLEIWsdgDk.InvqsdandTLhsFgeWRetdLlkr..ksH +NI +v+L+ LE d++++ ++ +a+ TL sF +W ++ L+ +++ +H KIAA2029 132 INIAIVgLILLE---DEQPgLVISHHADHTLSSFCQW-QSGLMGKdgTRH 177 DnAqLLtgidf......dgntiGaAyvggmCspkrSvGVvqdhspivllv D+A+LLtg d + ++++ t+G A+++gmCs+ rS+ +++d l++ KIAA2029 178 DHAILLTGLDIcswknePCDTLGFAPISGMCSKYRSCTINEDT---GLGL 224 AvtMAHELGHNLGmtHDdkntdgCtCegggsCIMnpv.assspskKkFSn A t+AHE GHN+Gm HD++ + C+ +++ IM+p a++ S KIAA2029 225 AFTIAHESGHNFGMIHDGEGN-MCKK--SEGNIMSPTlAGRNGVF-SWSP 270 CSkddyqkFltkqkpqCLlNkP<-* CS+ +++kFl+ + CL ++P KIAA2029 271 CSRQYLHKFLSTAQAICLADQP 292 PF01421.9.fs: domain 2 of 2, from 151 to 292: score 74.7, E = 5.6e-20 *->vqsdandTLhsFgeWRetdLlkr..ksHDnAqLLtgidf......dg ++ +a+ TL sF +W ++ L+ +++ +HD+A+LLtg d + ++++ KIAA2029 151 ISHHADHTLSSFCQW-QSGLMGKdgTRHDHAILLTGLDIcswknePC 196 ntiGaAyvggmCspkrSvGVvqdhspivllvAvtMAHELGHNLGmtHDdk t+G A+++gmCs+ rS+ +++d l++A t+AHE GHN+Gm HD++ KIAA2029 197 DTLGFAPISGMCSKYRSCTINEDT---GLGLAFTIAHESGHNFGMIHDGE 243 ntdgCtCegggsCIMnpv.assspskKkFSnCSkddyqkFltkqkpqCLl + C+ +++ IM+p a++ S CS+ +++kFl+ + CL KIAA2029 244 GN-MCKK--SEGNIMSPTlAGRNGVF-SWSPCSRQYLHKFLSTAQAICLA 289 NkP<-* ++P KIAA2029 290 DQP 292 PF00090.9.ls: domain 1 of 5, from 387 to 437: score 63.2, E = 8e-16 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s+Ws WSpCS TCG+G++ R R+c +p+P +gg++C+g ++ + KIAA2029 387 SDWSSWSPCSRTCGGGVSHRSRLCTNPKPS-HGGKFCEGSTRT--LK 430 aCdmmdkC<-* C + +kC KIAA2029 431 LC-NSQKC 437 PF00090.9.fs: domain 1 of 6, from 387 to 437: score 61.3, E = 8.7e-18 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s+Ws WSpCS TCG+G++ R R+c +p+P +gg++C+g ++ + KIAA2029 387 SDWSSWSPCSRTCGGGVSHRSRLCTNPKPS-HGGKFCEGSTRT--LK 430 aCdmmdkC<-* C + +kC KIAA2029 431 LC-NSQKC 437 PF05986.4.ls: domain 1 of 1, from 543 to 655: score 190.9, E = 2.8e-54 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA ++++G +tk+++++ Y+++vtIP GAr+I+I E++ S+ +y+ KIAA2029 543 TIHRGLYTKHHHTNQYYHMVTIPSGARSIRIYEMNVST-----SYIS 584 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt ++n+ + y+LNG+wt+++pgr +++ GT+f+Y+r s + +pE L KIAA2029 585 VRNAL-RR-YYLNGHWTVDWPGR-YKFSGTTFDYRR-SYN----EPENLI 626 atGPtnepLivqvLfqggapnpgikYeYtiP<-* atGPtne+Liv++Lfq ++npg+++eY++P KIAA2029 627 ATGPTNETLIVELLFQ--GRNPGVAWEYSMP 655 PF05986.4.fs: domain 1 of 1, from 543 to 655: score 189.0, E = 1.1e-53 *->ktvkGtFtkaslgaGYndVvtIPaGArhIlIrElkkSgqrnddnyLA ++++G +tk+++++ Y+++vtIP GAr+I+I E++ S+ +y+ KIAA2029 543 TIHRGLYTKHHHTNQYYHMVTIPSGARSIRIYEMNVST-----SYIS 584 LknsdTGskyiLNGnwtisapgrtfelaGTvfeYsrisddvsntapEsLt ++n+ + y+LNG+wt+++pgr +++ GT+f+Y+r s + +pE L KIAA2029 585 VRNAL-RR-YYLNGHWTVDWPGR-YKFSGTTFDYRR-SYN----EPENLI 626 atGPtnepLivqvLfqggapnpgikYeYtiP<-* atGPtne+Liv++Lfq ++npg+++eY++P KIAA2029 627 ATGPTNETLIVELLFQ--GRNPGVAWEYSMP 655 PF00090.9.ls: domain 2 of 5, from 731 to 783: score 6.4, E = 0.0099 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.... + WS+CS TCG+G ++R c ++ +++ep + +++ + KIAA2029 731 ---GNWSACSRTCGGGAQSRPVQCTRRV--HYDSEPVPASLCPqpap 772 leteaCdmmdkC<-* +aC + + C KIAA2029 773 SSRQAC-NSQSC 783 PF00090.9.ls: domain 3 of 5, from 790 to 844: score 12.2, E = 0.002 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe.... ++W +CS TCGkG r R c+s+ P + +++ d++ ++++ KIAA2029 790 ---GPWAECSHTCGKGWRKRAVACKSTNP--SARAQLLPDAVCtsep 831 ..leteaCdmmdkC<-* ++ eaC + C KIAA2029 832 kpRMHEAC-LLQRC 844 PF00090.9.ls: domain 4 of 5, from 852 to 898: score 12.6, E = 0.0018 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s WS+CSVTC G++ R +c+ + g+++el ++ KIAA2029 852 WLVSAWSQCSVTCERGTQKRFLKCA--------EKYVSGKYRELASK 890 aCdmmdkC<-* +C + +k KIAA2029 891 KCSHLPKP 898 PF00090.9.ls: domain 5 of 5, from 925 to 977: score 14.0, E = 0.0012 *->spW..seWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqele + W s+WS+C+ +CG+G++tR c + + C + + + KIAA2029 925 GSWfaSPWSQCTASCGGGVQTRSVQCLAGG---RPASGCLLHQKPSA 968 teaCdmmdkC<-* + aC + + C KIAA2029 969 SLAC-NTHFC 977 PF08686.1.ls: domain 1 of 1, from 986 to 1018: score 58.3, E = 2.3e-14 *->eCrDsprlAnCelVvqakLCshkyYsqfCCrSCtr<-* C+D ++ +C+lV+q+++Cshk+Y+++CC++C++ KIAA2029 986 FCKDYFH--WCYLVPQHGMCSHKFYGKQCCKTCSK 1018 PF08686.1.fs: domain 1 of 1, from 986 to 1018: score 56.3, E = 7.8e-15 *->eCrDsprlAnCelVvqakLCshkyYsqfCCrSCtr<-* C+D ++ +C+lV+q+++Cshk+Y+++CC++C++ KIAA2029 986 FCKDYFH--WCYLVPQHGMCSHKFYGKQCCKTCSK 1018 //