hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19355125/chunk_1/iprscan-20080502-19355125.nocrc
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Query sequence: KIAA2028
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00139                                                 143.2    2.7e-38   1
SM00233                                                 123.7    2.1e-32   2
SM00295                                                 100.1    2.6e-25   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/2     660   755 ..     1    82 []    83.2  3.2e-20
SM00233     2/2     768   877 ..     1    82 []    40.5  2.3e-07
SM00139     1/1     911  1066 ..     1   166 []   143.2  2.7e-38
SM00295     1/1    1073  1310 ..     1   232 []   100.1  2.6e-25

Alignments of top-scoring domains:
SM00233: domain 1 of 2, from 660 to 755: score 83.2, E = 3.2e-20
                   *->vikeGwLlkks..k.swkkryfvLfngvLlyyksk.....kpkgsip
                      ++k+G+Llk+s++ +swk+r+fvL++g Llyyks+++  +kp+g i 
    KIAA2028   660    LEKSGYLLKMSgkVkSWKRRWFVLKGGELLYYKSPsdvirKPQGHIE 706  

                   Lsgc.svre.p...cFeivt.drtlllqAeseeereeWvealqsaiaka<
                   Ls   s+ +++++ + +++t+++t++l A+s+  +eeW++ lq++++ + 
    KIAA2028   707 LSAScSILRgDnkqTVQLTTeKHTYYLTADSPNILEEWIKVLQNVLRVQ  755  

                   -*
                     
    KIAA2028     -    -    

SM00233: domain 2 of 2, from 768 to 877: score 40.5, E = 2.3e-07
                   *->vikeGwLlkksk.swkkryfvLfngvLlyyksk...kpkgsipLsgc
                      ++++G L+k + +  k+++++L +++L+y++s +++ p g i L ++
    KIAA2028   768    PTMKGLLTKVKHgYSKRVWCTLIGKTLYYFRSQedkFPLGQIKLWEA 814  

                   svre.p.....................cFeivt.dr..tlllqAeseeer
                   +v+e +++ +++++ + ++++  + + ++ i+ +d+++t+ll  + + e+
    KIAA2028   815 KVEEvDrscdsdedyeasgrsllsthyTIVIHPkDQgpTYLLIGS-KHEK 863  

                   eeWvealqsaiaka<-*
                   + W+ +l  a+ ++   
    KIAA2028   864 DTWLYHLTVAAGSN    877  

SM00139: domain 1 of 1, from 911 to 1066: score 143.2, E = 2.7e-38
                   *->fskkPiktsLLkleddkeedskeAvkiFkaILkfMGDlPlpkssssk
                      +sk+ i  +L++l+++   ++ eA+k+Fk+++ f++  +++      
    KIAA2028   911    HSKEGIISPLTTLPSE--ALQTEAIKLFKTCQLFIN-AAVDS----- 949  

                   lytLGeaqeFnmlepspdshlelvqfIlqkglarpeLRDEiYCQliKQlt
                                 p +d+h++l+q +lq +l +peL++Ei CQliKQ++
    KIAA2028   950 --------------PAIDYHISLAQSALQICLTHPELQNEICCQLIKQTR 985  

                   kR..........GWeLLylctglFpPSeSrllkyLlqFLkrradqptetp
                    R++++++++ +GW+LL+lc+glF+P +  +l+ L+ +Lkr+ad +te +
    KIAA2028   986 RRqpqnqpgplqGWQLLALCVGLFLPHH-PFLWLLRLHLKRNADSRTEFG 1034 

                   qlmaqglakycle........GaRkqpPsrlEleAik<-*
                        ++a yc++  ++++++G R+  Psr+E+ +++   
    KIAA2028  1035 -----KYAIYCQRcvertqqnGDREARPSRMEILSTL    1066 

SM00295: domain 1 of 1, from 1073 to 1310: score 100.1, E = 2.6e-25
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                      ++ p+ + V++++g ++ + +d stt+ee+l+t+ +  g+   ++ +
    KIAA2028  1073    HSLPFSIPVHFMNGIYQVVGFDASTTVEEFLNTLNQDTGMRKPAQSG 1119 

                   FgLqfedkded..shWldpaktilkqdvks............pksepltl
                   F+L+ +d+ + +  h+l+ + +i++++ k+++ ++++++++ + + + +l
    KIAA2028  1120 FALFTDDPSGRdlEHCLQGNIKICDIISKWeqaskeqqpgkcEGTRTVRL 1169 

                   yFRvkFyppdwhgppeqlkeDptrynllylQvrddilsGrlpcpseeeal
                    ++ ++y++     + + + D   + ll +Q  d+i++G +p++ ++ al
    KIAA2028  1170 TYKNRLYFSV----QARGETDREKL-LLMYQTNDQIINGLFPLN-KDLAL 1213 

                   lLAaLalqaefGdydpeeeek.....kkslkhvakelslkrflPkqllds
                   ++AaL+ q+e Gd+  + + + ++ ++  +         ++f+Pk+++d 
    KIAA2028  1214 EMAALLSQVEIGDFERPFSTPaghvtNQCKVNQTLKQVIEKFYPKRYRD- 1262 

                   ikasflqiqltlkewrerIvelhkehaglspeeaklkYLelarrLpptYG
                        + +  +l ++ +r++ +++ ++g s +++ + YL +ar++p  +G
    KIAA2028  1263 -----GCSEEQLRQLCQRLSTRWMALRGHSAADCVRIYLTVARKWP-FFG 1306 

                   velF<-*
                   + lF   
    KIAA2028  1307 AKLF    1310 

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