hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19355125/chunk_1/iprscan-20080502-19355125.nocrc
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Query sequence: KIAA2028
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                      108.2    1.8e-32   2
PF00169.19.ls PH domain                                      112.2    1.4e-30   2
PF00784.8.fs MyTH4 domain                                    91.6    1.4e-25   1
PF00784.8.ls MyTH4 domain                                    93.5    5.7e-25   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.ls   1/2     660   753 ..     1    92 []    86.1    1e-22
PF00169.19.fs   1/2     660   753 ..     1    92 []    84.1  3.9e-25
PF00169.19.fs   2/2     768   875 ..     1    92 []    24.1  6.9e-07
PF00169.19.ls   2/2     768   875 ..     1    92 []    26.1  0.00011
PF00784.8.fs   1/1     953  1066 ..     1   122 []    91.6  1.4e-25
PF00784.8.ls   1/1     953  1066 ..     1   122 []    93.5  5.7e-25

Alignments of top-scoring domains:
PF00169.19.ls: domain 1 of 2, from 660 to 753: score 86.1, E = 1e-22
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk...kkpkgsip
                      ++k+G+Llk++++ kswk+R+fvL+++ Llyyk++++   kp+g i 
    KIAA2028   660    LEKSGYLLKMSgKVKSWKRRWFVLKGGELLYYKSPSdviRKPQGHIE 706  

                   Lsgi.qvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsai
                   Ls + ++ + ++   k + +++t+ + t++l a+s+  ++eW+k +q+++
    KIAA2028   707 LSAScSILRGDN---KQTVQLTTeKH-TYYLTADSPNILEEWIKVLQNVL 752  

                   r<-*
                   r   
    KIAA2028   753 R    753  

PF00169.19.fs: domain 1 of 2, from 660 to 753: score 84.1, E = 3.9e-25
                   *->vikeGwLlkkg.gkkswkkRyfvLfddvLlyykdkk...kkpkgsip
                      ++k+G+Llk++++ kswk+R+fvL+++ Llyyk++++   kp+g i 
    KIAA2028   660    LEKSGYLLKMSgKVKSWKRRWFVLKGGELLYYKSPSdviRKPQGHIE 706  

                   Lsgi.qvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsai
                   Ls + ++ + ++   k + +++t+ + t++l a+s+  ++eW+k +q+++
    KIAA2028   707 LSAScSILRGDN---KQTVQLTTeKH-TYYLTADSPNILEEWIKVLQNVL 752  

                   r<-*
                   r   
    KIAA2028   753 R    753  

PF00169.19.fs: domain 2 of 2, from 768 to 875: score 24.1, E = 6.9e-07
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk.kkpkgsipLsg
                      ++++G L+k +  +  k+++++L +++L+y+++  +k p g i L +
    KIAA2028   768    PTMKGLLTKVK-HGYSKRVWCTLIGKTLYYFRSQEdKFPLGQIKLWE 813  

                   iqvtkvpdn...............krkncFeirt.dretlllqaeseeer
                   ++v++v+++ +++++ + ++++    +++++i+ +d+   +l   s+ e+
    KIAA2028   814 AKVEEVDRScdsdedyeasgrsllSTHYTIVIHPkDQGPTYLLIGSKHEK 863  

                   keWvkaiqsair<-*
                    +W+ ++  a+    
    KIAA2028   864 DTWLYHLTVAAG    875  

PF00169.19.ls: domain 2 of 2, from 768 to 875: score 26.1, E = 0.00011
                   *->vikeGwLlkkggkkswkkRyfvLfddvLlyykdkk.kkpkgsipLsg
                      ++++G L+k +  +  k+++++L +++L+y+++  +k p g i L +
    KIAA2028   768    PTMKGLLTKVK-HGYSKRVWCTLIGKTLYYFRSQEdKFPLGQIKLWE 813  

                   iqvtkvpdn...............krkncFeirt.dretlllqaeseeer
                   ++v++v+++ +++++ + ++++    +++++i+ +d+   +l   s+ e+
    KIAA2028   814 AKVEEVDRScdsdedyeasgrsllSTHYTIVIHPkDQGPTYLLIGSKHEK 863  

                   keWvkaiqsair<-*
                    +W+ ++  a+    
    KIAA2028   864 DTWLYHLTVAAG    875  

PF00784.8.fs: domain 1 of 1, from 953 to 1066: score 91.6, E = 1.4e-25
                   *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW
                      ++ i l+q+ l++++  peL +Ei CQ+iKQ++  + q   + l GW
    KIAA2028   953    DYHISLAQSALQICLTHPELQNEICCQLIKQTRRRQPQNQPGPLQGW 999  

                   eLlylctgtFpPSeellkyLsEqFlhrraheqssgpelegyaadcqerLk
                   +Ll lc+g+F+P   +l  L+   l+r+a+   s +e+ +ya++cq+  +
    KIAA2028  1000 QLLALCVGLFLPHHPFLWLLR-LHLKRNAD---SRTEFGKYAIYCQRCVE 1045 

                   iYktqknGYqsRkypPsrlEieAik<-*
                     +tq nG   R+  Psr Ei++++   
    KIAA2028  1046 --RTQQNG--DREARPSRMEILSTL    1066 

PF00784.8.ls: domain 1 of 1, from 953 to 1066: score 93.5, E = 5.7e-25
                   *->rsridlvqkIlkqgikrpeLRDEiYCQiiKQltkNPsqkkqSalrGW
                      ++ i l+q+ l++++  peL +Ei CQ+iKQ++  + q   + l GW
    KIAA2028   953    DYHISLAQSALQICLTHPELQNEICCQLIKQTRRRQPQNQPGPLQGW 999  

                   eLlylctgtFpPSeellkyLsEqFlhrraheqssgpelegyaadcqerLk
                   +Ll lc+g+F+P   +l  L+   l+r+a+   s +e+ +ya++cq+  +
    KIAA2028  1000 QLLALCVGLFLPHHPFLWLLR-LHLKRNAD---SRTEFGKYAIYCQRCVE 1045 

                   iYktqknGYqsRkypPsrlEieAik<-*
                     +tq nG   R+  Psr Ei++++   
    KIAA2028  1046 --RTQQNG--DREARPSRMEILSTL    1066 

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