# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fh08764.fasta.huge -Q ../query/KIAA2025.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA2025, 1109 aa
 vs ./tmplib.25089 library

1986396 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 10.8289+/-0.0104; mu= -9.3888+/- 0.705
 mean_var=451.0751+/-105.559, 0's: 0 Z-trim: 8  B-trim: 5 in 1/39
 Lambda= 0.060388

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1760  ( 2219 res)   af00030                    (2219)  289 40.8  0.0026


>>KIAA1760  ( 2219 res)   af00030                         (2219 aa)
 initn: 149 init1:  82 opt: 289  Z-score: 151.2  bits: 40.8 E(): 0.0026
Smith-Waterman score: 291;  26.471% identity (41.471% similar) in 340 aa overlap (447-760:712-1041)

        420       430       440       450        460       470     
KIAA20 EELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILP-DEGAVDLPSRKPPALPNGIVS
                                     .:..   :   :    :  .:  ::. .. 
KIAA17 PAPACPPSLQQHFPDPAMSFAPVLPPPSTPMPTGPGQPAPPGQQPPPLAQPTPLPQVLAP
             690       700       710       720       730       740 

         480       490       500        510       520       530    
KIAA20 TGNTVTQLIPRGTDPSYDSSLKPGKIDHLSS-SAPGSPPDLLESVPKSISALPVNPHSIP
          .  : .:    :    . . :   .:.  . : .: . : .:: ..  .:: :   :
KIAA17 QPVVPLQPVPPHLPPYLAPASQVGAPAQLKPLQMPQAPLQPLAQVPPQMPPIPVVPPITP
             750       760       770       780       790       800 

          540       550       560       570         580        590 
KIAA20 PRGPADLPPMPVTKPLQMVPRGSQLYPAQQTDVYYQDPRGAAP--PFEPA-PYQQGMYYT
         :   :::     :   ::    . : :  .     :  :::  :  :: : :      
KIAA17 LAGIDGLPPALPDLPTATVP---PVPPPQYFSPAVILPSLAAPLPPASPALPLQAVKLPH
             810       820          830       840       850        

             600        610       620       630       640          
KIAA20 PPPQCVSRFVRPP-PSAPEPAPPYLDHYPPYLQERVVNSQYGTQPQQYPPIYPSHYDG--
       ::   ..   :   :.::   :  :   :: .    ..:  .  : :  :.::. .    
KIAA17 PPGAPLAMPCRTIVPNAPATIP-LLAVAPPGVAALSIHSAVAQLPGQ--PVYPAAFPQMA
      860       870       880        890       900         910     

       650       660       670       680       690       700       
KIAA20 -RRVYPAPSYTREEIFRESPIPIEIPPAAVPSYVPESRERYQQIESYYPVAPHPTQIRPS
          : :.: .: ... : .:    .::   :.  :.     :      :: : :   :: 
KIAA17 PTDVPPSPHHTVQNM-RATPPQPALPPQ--PTLPPQPVLPPQPTLPPQPVLP-PQPTRPP
         920       930        940         950       960        970 

       710           720           730       740         750       
KIAA20 YLREPPYSRLPP----PPQP----HPSLDELHRRRKEIMAQLEERKVI--SPPPFA----
           ::   :::    ::::    .:   . :  ..   :     ...   : :.:    
KIAA17 QPVLPPQPMLPPQPVLPPQPALPVRPEPLQPHLPEQAAPAATPGSQILLGHPAPYAVDVA
             980       990      1000      1010      1020      1030 

              760       770       780       790       800       810
KIAA20 ---PSPTLPPTFHPEEFLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVA
          :.  .::                                                  
KIAA17 AQVPTVPVPPAAVLSPPLPEVLLPAAPELLPQFPSSLATVSASVQSVPTQTATLLPPANP
            1040      1050      1060      1070      1080      1090 




1109 residues in 1 query   sequences
1986396 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:26:08 2008 done: Thu Dec 18 15:26:08 2008
 Total Scan time:  0.720 Total Display time:  0.050

Function used was FASTA [version 34.26.5 April 26, 2007]