hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19273858/chunk_1/iprscan-20080502-19273858.nocrc
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Query sequence: KIAA2023
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00249                                                  34.7    1.3e-05   1
SM00526                                                  33.2    3.5e-05   1
SM00184                                                  29.2    0.00059   1
SM00487                                                  17.2     0.0072   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00526      1/1      21    87 ..     1    70 []    33.2  3.5e-05
SM00487      1/1     112   460 ..     1   219 []    17.2   0.0072
SM00249      1/1     245   292 ..     1    39 []    34.7  1.3e-05
SM00184      1/1    1017  1063 ..     1    23 []    29.2  0.00059

Alignments of top-scoring domains:
SM00526: domain 1 of 1, from 21 to 87: score 33.2, E = 3.5e-05
                   *->pasHPpyseMIteAItaLKERkGSSlqAIkKYIeanhykvlpnnnkf
                         H  +  MI+ A++ ++ +kG S  +I+KY+ +  y  + ++   
    KIAA2023    21    ILLHLATRVMILTAVKEMNGKKGVSILSIYKYVSSI-YRYDVQR--N 64   

                   rklLklaLkklVasGkLvqvKGs<-*
                   r+lLk+ Lk l   G  +q+KG    
    KIAA2023    65 RSLLKRMLKCLIFEGLVKQIKGH    87   

SM00487: domain 1 of 1, from 112 to 460: score 17.2, E = 0.0072
                   *->gf.klrpyQkeaipwlleg............................
                        + +r++Qke+ +   ++++++  +++++++++++     ++++++
    KIAA2023   112    AVgSPRKIQKETRKSGNKDtdseylpsdtsdddddpyyyyyksrrnr 158  

                   ....................................rdvilaapTGsGKT
                   ++ +++  ++++++++++  +++++++ + +++++  dv +       K+
    KIAA2023   159 sklrkklvpstkkgksqpfinpdsqghcpatsdsgiTDVAMS------KS 202  

                   lafllpllellkkgkplas...............................
                   +     + e  +++  +++ ++ ++ +++ +++++ ++ ++++ + +   
    KIAA2023   203 T----CISEFNQEHETEDCaeslnhadsdvppsntmspfntsdyrfecic 248  

                   ...............................................kkg
                   ++ ++ +++++ +  + +  ++ +  + ++++ + ++   ++     ++ 
    KIAA2023   249 geldqidrkprvqclkchlwqhakcvnydeknlkikpfycphclvamEPV 298  

                   kgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlkvvglygG.sktk
                       +L+++P  + ++Qw++e++++  s+         +v++y G +k  
    KIAA2023   299 STRATLIISP-SSICHQWVDEINRHVRSSS-------LRVLVYQGvKK-- 338  

                   ekeqlrklksgkt....dilvtTpgrLldll.ngkg..............
                        + +++ ++  ++di++ T+++L+++l+    ++++++++++ +++
    KIAA2023   339 -----DGFLQPHFlaeqDIVIITYDVLRSELnYVDIphsnsedgrrlrnq 383  

                   .........lsl.nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpk
                   ++    +++l   ++ ++ lDEa+++           + + +++ +rl +
    KIAA2023   384 krymaipspLVAvEWWRICLDEAQMVE--------CPTVKAAeMAQRL-S 424  

                   nrqrlllSATppeienllklflnlpelfpnpvfisvgftlepieqf<-*
                    ++r++ S+Tp  +++ l++++       ++vf+ ++  +  ++++   
    KIAA2023   425 GINRWCISGTP--VQRGLEDLFG------LVVFLGIE--PYCVKHW    460  

SM00249: domain 1 of 1, from 245 to 292: score 34.7, E = 1.3e-05
                   *->yCvCgk......g.llqCdkgCdrwyHv.Clgpple.epdg.wyCpr
                       C+Cg+ +  ++ + +qC  +C  w+H +C+++++++++ +++yCp+
    KIAA2023   245    ECICGEldqidrKpRVQCL-KCHLWQHAkCVNYDEKnLKIKpFYCPH 290  

                   Ck<-*
                   C+   
    KIAA2023   291 CL    292  

SM00184: domain 1 of 1, from 1017 to 1063: score 29.2, E = 0.00059
                   *->CpICle.....pvvlpCgH.FCr.Ci.................CPlC
                      CpIC  + +++  vl+CgH FC +Ci+   ++ + ++++++ +C +C
    KIAA2023  1017    CPICARqlgkqWAVLTCGHcFCNeCIsiiieqysvgshrssikCAIC 1063 

                   <-*
                      
    KIAA2023     -     -    

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