hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-19273858/chunk_1/iprscan-20080502-19273858.nocrc
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Query sequence: KIAA2023
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00176.13.fs  SNF2 family N-terminal domain             47.2    1.2e-12   2
PF00538.9.fs   linker histone H1 and H5 family           41.9      2e-10   1
PF00538.9.ls   linker histone H1 and H5 family           43.9    5.2e-10   1
PF00628.19.fs  PHD-finger                                27.4    2.1e-08   1
PF00176.13.ls  SNF2 family N-terminal domain             -6.9    8.7e-08   1
PF00628.19.ls  PHD-finger                                29.4    1.2e-05   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00538.9.fs     1/1      23    97 ..     1    78 []    41.9    2e-10
PF00538.9.ls     1/1      23    97 ..     1    78 []    43.9  5.2e-10
PF00628.19.fs    1/1     245   294 ..     1    51 []    27.4  2.1e-08
PF00628.19.ls    1/1     245   294 ..     1    51 []    29.4  1.2e-05
PF00176.13.ls    1/1     287   572 ..     1   355 []    -6.9  8.7e-08
PF00176.13.fs    1/2     303   450 ..    62   204 ..    42.1  2.9e-11

Alignments of top-scoring domains:
PF00538.9.fs: domain 1 of 1, from 23 to 97: score 41.9, E = 2e-10
                   *->sHPpyseMIvaAIaaLKERkGSSvqAIkKYIeanhYkvdpaasnlns
                       H  ++ MI++A + ++ +kG S   I KY+++  Y+ d +  +++s
    KIAA2023    23    LHLATRVMILTAVKEMNGKKGVSILSIYKYVSSI-YRYDVQ--RNRS 66   

                   hlklaLKkgVasGkLvqvKGsGASGSFKLak<-*
                   +lk++LK +   G ++q+KG G SG F L+k   
    KIAA2023    67 LLKRMLKCLIFEGLVKQIKGHGFSGTFTLGK    97   

PF00538.9.ls: domain 1 of 1, from 23 to 97: score 43.9, E = 5.2e-10
                   *->sHPpyseMIvaAIaaLKERkGSSvqAIkKYIeanhYkvdpaasnlns
                       H  ++ MI++A + ++ +kG S   I KY+++  Y+ d +  +++s
    KIAA2023    23    LHLATRVMILTAVKEMNGKKGVSILSIYKYVSSI-YRYDVQ--RNRS 66   

                   hlklaLKkgVasGkLvqvKGsGASGSFKLak<-*
                   +lk++LK +   G ++q+KG G SG F L+k   
    KIAA2023    67 LLKRMLKCLIFEGLVKQIKGHGFSGTFTLGK    97   

PF00628.19.fs: domain 1 of 1, from 245 to 294: score 27.4, E = 2.1e-08
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipeWyCpe
                       C +Cg+ +  + +  +qC +C  w+H++C++ +++   i+++yCp+
    KIAA2023   245    EC-ICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPH 290  

                   Ckpk<-*
                   C  +   
    KIAA2023   291 CLVA    294  

PF00628.19.ls: domain 1 of 1, from 245 to 294: score 29.4, E = 1.2e-05
                   *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipeWyCpe
                       C +Cg+ +  + +  +qC +C  w+H++C++ +++   i+++yCp+
    KIAA2023   245    EC-ICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPH 290  

                   Ckpk<-*
                   C  +   
    KIAA2023   291 CLVA    294  

PF00176.13.ls: domain 1 of 1, from 287 to 572: score -6.9, E = 8.7e-08
                   *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay
                                  y++          +++ A                 
    KIAA2023   287    ------------YCP----------HCLVA----------------- 294  

                   lkelkpktekrigpfLvVcPlStldnWlnEfekw..apddlnivvyygdg
                   +   ++++      +L++ P+S+ ++W+ E+ ++ + + +l+++vy g +
    KIAA2023   295 MEPVSTRA------TLIISPSSICHQWVDEINRHvrSS-SLRVLVYQGVK 337  

                   nsrdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLl..........
                   ++        +l+++++++     d++i++Y+++r+  L   + ++++++
    KIAA2023   338 KDG-------FLQPHFLAE----QDIVIITYDVLRS-ELNyvdiphsnse 375  

                   ............kdkdeLkklfinwryvilDEGHHriKNedSklrkskal
                   ++++ +++++   + + L    ++w ++ lDE+  ++  ++ k   ++  
    KIAA2023   376 dgrrlrnqkrymAIPSPLVA--VEWWRICLDEA-QMVECPTVKA--AEMA 420  

                   kklkhannRLlLTGTPlQNnLkElwsLlnFlmPgiFgsleeyindgksFd
                     l    nR++++GTP Q  L++l+ L+ Fl   +   +       + + 
    KIAA2023   421 QRLS-GINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVK-------HWWV 462  

                   kwfnnpiaeggdsavLadatefLrykkeveeglklinrLhkilkpflLRR
                   +   +p +                            + L+  + ++l R 
    KIAA2023   463 RLLYRPYCKKNP------------------------QHLYSFIAKILWRS 488  

                   lKkdveksLpppeKteyvlfcelsklQkelY..kkflkeeskdvkainds
                    Kkdv ++++ p+ te +  + +s  ++ +Y++++  +    dv +    
    KIAA2023   489 AKKDVIDQIQIPPQTEEIHWLHFSPVERHFYhrQHEVC--CQDVVVKLRK 536  

                   er...........reggkeknegksrllnlimqLrKicNfHPyLf<-*
                     +   + ++ ++r          +++l  +++Lr++c+ HP  +   
    KIAA2023   537 ISdwalklssldrRTV--------TSILYPLLRLRQACC-HPQAV    572  

PF00176.13.fs: domain 1 of 2, from 303 to 450: score 42.1, E = 2.9e-11
                   *->fLvVcPlStldnWlnEfekw..apddlnivvyygdgnsrdqdrkdel
                      +L++ P+S+ ++W+ E+ ++ + + +l+++vy g +++        +
    KIAA2023   303    TLIISPSSICHQWVDEINRHvrSS-SLRVLVYQGVKKDG-------F 341  

                   lrnvlkdggrlkfdvlitsYeiirkNkLl.....................
                   l+++++++     d++i++Y+++r+  L   + ++++++++++ +++++ 
    KIAA2023   342 LQPHFLAE----QDIVIITYDVLRS-ELNyvdiphsnsedgrrlrnqkry 386  

                   .kdkdeLkklfinwryvilDEGHHriKNedSklrkskalkklkhannRLl
                     + + L    ++w ++ lDE+  ++  ++ k   ++    l    nR++
    KIAA2023   387 mAIPSPLVA--VEWWRICLDEA-QMVECPTVKA--AEMAQRLS-GINRWC 430  

                   LTGTPlQNnLkElwsLlnFl<-*
                   ++GTP Q  L++l+ L+ Fl   
    KIAA2023   431 ISGTPVQRGLEDLFGLVVFL    450  

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