# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/ff04229.fasta.huge -Q ../query/KIAA2022.ptfa ./tmplib.25089 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA2022, 1520 aa vs ./tmplib.25089 library 1985985 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.2015+/-0.00666; mu= 13.5658+/- 0.454 mean_var=156.5463+/-35.779, 0's: 0 Z-trim: 4 B-trim: 0 in 0/40 Lambda= 0.102507 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1315 ( 1981 res) fh12764s1 (1981) 176 39.4 0.0084 >>KIAA1315 ( 1981 res) fh12764s1 (1981 aa) initn: 144 init1: 57 opt: 176 Z-score: 142.2 bits: 39.4 E(): 0.0084 Smith-Waterman score: 205; 20.894% identity (49.721% similar) in 895 aa overlap (350-1185:296-1125) 320 330 340 350 360 370 KIAA20 SFQDNVRDKTTLLMQEDAQFNFFPSVFTTCPKRESKSGALKQSSDFSQFKVPDVSIIWGE :: ::::. .:..:: :..: .. : : KIAA13 LSTGCGDGEPRILEASQRLQGHPEKYGKGEPKTESKSSKFKSNSD-SDYKGERINSSW-E 270 280 290 300 310 320 380 390 400 410 420 KIAA20 EDKNLDKKKGKEEGQEDKGVEKKD------------GKDNGEKPALNKPCSGT-EVEQLK .. ...... ..: :: .:... ..:. :. . .:: : . . .. . KIAA13 KETPGERSHSRVDSQSDKKLERQSERSQNINRKEVKSQDKEERKVDQKPKSVVKDQDHWR 330 340 350 360 370 380 430 440 450 460 470 480 KIAA20 NPKQGHLANSLETSGSFSDDSSFIEISYDAMGEIKDCSRYMARDTNSGSSSSQQNYGLRA ... : .: .. .:: .:: .. : ::.: : . .: : :.. : KIAA13 RSERASLPHS-KNEITFSHNSSKYHLEERRGWE--DCKR----DKSVNSHSFQDG---RC 390 400 410 420 430 490 500 510 520 530 540 KIAA20 KRKVRYSEDYLYDVDSLEGEKVNERKEWLPVGSKEEDDDEWCPKKRRKVTRKEPPVIIKY .. :. . ..:: : :. ..: . : : .::.. ...: . KIAA13 PSSLSNSRTH-KNIDSKE---VDAMHQWENTPLKAERHRTEDKRKREQESKEE-----NR 440 450 460 470 480 550 560 570 580 590 600 KIAA20 IIINRFKGEKNMLVKLGKVDASETTVNLSENQLNKYAKLAPLKGFWQKKKKQRNTNTDSI : :. . . : : .: ....::..:.... : : : . .. ... . KIAA13 HIRNEKRVPTEHLQKTNK-ETKKTTTDLKKQNEPKTDKGEVLDNGVSEGADNKELAMKAE 490 500 510 520 530 540 610 620 630 640 650 660 KIAA20 KTPFSQKQSFEPGSFEVSF---LPPARKRKSKLGNRHRIQRIPS---IEISASSKQISLC . : :.. :: .. : ::.:. . :.:.: ::. . : :: :.. KIAA13 SGPNETKNKDLKLSFMKKLNLTLSPAKKQPVSQDNQHKITDIPKSSGVCDSESSMQVKTV 550 560 570 580 590 600 670 680 690 700 KIAA20 NDQRHASNH-------KED--GGLKGTL---KSAPLGAPSCANGSHLNDITGPDSVKVKA :.: .: : :.:: : : :.. : .. .:. :.. KIAA13 AYVPSISEHILGEAAVSEHTMGETKSTLLEPKVALLAVTEPRIGISETNKEDENSLLVRS 610 620 630 640 650 660 710 720 730 740 750 760 KIAA20 QDTEFKGPERKVLNKIKFKSEARLKSKKVKAAGQESK-PIVQMSPLLENQSSKANLKNEV :. .. : .. .: : .... :: : . :. ..: . : . .: KIAA13 VDNTMHCEEPICGTETSFPSPMEIQQT-------ESLFPSTGMKQTINNGRAAAPVVMDV 670 680 690 700 710 770 780 790 800 810 820 KIAA20 IPGTSNSSRLSEFHEAKAAKSSTFLPTTCSSEMPLSSANVTTNIPVIPGGYLQTLLDASD . :. :. .. ..: .: . . . :: .. ..:.. . :: .. .: KIAA13 LQ-TDVSQNFGLELDTKRNDNSDYCGISEGMEMKVA---LSTTVSETTESILQPSIEEAD 720 730 740 750 760 770 830 840 850 860 870 880 KIAA20 LSNNTSISYFSHHSPEQNEGSLTQT---EKSFVPLQPTQDCVLTSSSDSELQQSS-HNFK . : ..: . : :. : :.. :.: :. . :: :::. . . KIAA13 I---LPIMLSEDNNP-KFEPSVIVTPLVESKSCHLEP---CLPKETLDSSLQQTELMDHR 780 790 800 810 820 890 900 910 920 930 KIAA20 MESSNYRNVW---PNKATSGTQEFMAEVSREIAPTQSSEFGASQVVSMENNLTPTTYN-- : ... .:. :.. : . . . . :.: .: ...:. :. .:: KIAA13 MATGETNSVYHDDDNSVLSIDLNHLRPIPEAISPLNSPVRPVAKVLRNESPPQVPVYNNS 830 840 850 860 870 880 940 950 960 970 980 990 KIAA20 --PICLNSGGSNCNKVLYDSMQDTQLPSDDSYQLCHFNNGEICFPFQQGPVNMDDGRLFS . : ... . .: : ...: : : . : .... : ...:. KIAA13 HKDVFLPNSAHSTSKSQSDLNKENQKPIYKSDK-C--TEADTC---KNSPL--------- 890 900 910 920 930 1000 1010 1020 1030 1040 1050 KIAA20 FDSMAPLSVSSSNYCSLSLKSCEKDGDDDITDDFLAHCSPKLVIQQSIDEIAPLKESTDL : . . :.. : .: ::.. .. : . : . ... . . :.: KIAA13 -DELEEGEIRSDSETSKPQESFEKNSKRRVSADVR---KSKTIPRRGKSTVCLDKDSRKT 940 950 960 970 980 1060 1070 1080 1090 1100 KIAA20 -LDIS------NFTPDKFRHSSLSE-----MSPPDTPSLSPQITRCES-MKTLGTLKGFQ . : : ::: .:: .: :: . .. : :. : .. . :. .. KIAA13 HVRIHQTNNKWNKRPDKSSRSSKTEKKDKVMSTSSLEKIVPIIAVPSSEQEIMHMLRMIR 990 1000 1010 1020 1030 1040 1110 1120 1130 1140 1150 1160 KIAA20 EGVPGPLDSVEKIKWDCSTLSRQVQMEDG---FTLNNHQFQFHMFNDEDSVSLLQKNPCL . : . :.: : .. . .:.. :: .....: .. ::. :::: : KIAA13 KHV---RKNYMKFKAKFSLIQFHRIIESAILSFTSLIKHLNLHKIS--KSVTTLQKNLC- 1050 1060 1070 1080 1090 1100 1170 1180 1190 1200 1210 1220 KIAA20 STFNDPSGQISTNNKVSKSRKKSSPSKSGAMNQSSSQKNTRKKSLKGNNKGIEKPPGKNS . ... :.. :. :.. ... : KIAA13 DIIESKLKQVKKNGIVDRLFEQQLPDMKKKLWKFVDDQLDYLFAKLKKILVCDSKSFGRD 1110 1120 1130 1140 1150 1160 1520 residues in 1 query sequences 1985985 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:26:01 2008 done: Thu Dec 18 15:26:02 2008 Total Scan time: 0.840 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]