hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-19145391/chunk_1/iprscan-20080502-19145391.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA2016 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00325 217.7 1e-60 1 SM00233 81.9 7.5e-20 2 SM00455 68.6 7.6e-16 1 SM00228 40.1 2.9e-07 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00233 1/2 521 636 .. 1 82 [] 64.3 1.6e-14 SM00455 1/1 824 895 .. 1 76 [] 68.6 7.6e-16 SM00228 1/1 914 990 .. 1 80 [] 40.1 2.9e-07 SM00325 1/1 1117 1306 .. 1 211 [] 217.7 1e-60 SM00233 2/2 1340 1471 .. 1 82 [] 17.7 1.7 Alignments of top-scoring domains: SM00233: domain 1 of 2, from 521 to 636: score 64.3, E = 1.6e-14 *->vikeGwLlkks..............k.swkkryfvLfngvLlyyksk v k GwL k + ++ ++ +++wk+++++L++ +Ll+y+ KIAA2016 521 VRKAGWLFFKPlvtvqkerklelvaRrKWKQYWVTLKGCTLLFYETY 567 .........kpkgsipLsgcsvre.p.......cFeivt.dr.tlllqAe ++++ +++++p+ ++ ++ +v+ p++++++++F+++++ ++++l+qA KIAA2016 568 gknsmdqssAPRCALFAEDSIVQSvPehpkkenVFCLSNsFGdVYLFQAT 617 seeereeWvealqsaiaka<-* s+ ++e Wv+a +sa+a++ KIAA2016 618 SQTDLENWVTAVHSACASL 636 SM00455: domain 1 of 1, from 824 to 895: score 68.6, E = 7.6e-16 *->ktcrvhLPdnqrtvVkvRPGktvrDaLakaLkkRgLnpeacvVrlrg ++++vh++dn +++V ++P+++v+D+L +a+k+R+L+p++++++lr+ KIAA2016 824 IQTYVHFQDNHGVTVGIKPEHRVEDILTLACKMRQLEPSHYGLQLRK 870 dpqeGekkpldlnqdissLagqElvveel<-* ++ ++ + ++ ++++q +v++e+ KIAA2016 871 L----VDDNVEYCIPAPYEYMQQQVYDEI 895 SM00228: domain 1 of 1, from 914 to 990: score 40.1, E = 2.9e-07 *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv +Gf ++ + +++++ + if+s+v+p++ A+ G L++G + KIAA2016 914 CDFGFAVTAqvderqhlsRIFISDVLPDGLAYGEG------LRKGNE 954 IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-* I+ NG + v++l+ + +l + + +tL+ ++++ KIAA2016 955 IMTLNG-EAVSDLDLKQMEALFSEKSV-----GLTLIARPPD 990 SM00325: domain 1 of 1, from 1117 to 1306: score 217.7, E = 1e-60 *->vlkELlqTErnYVrdLkilvevflkpLkkeakssllpllspdevktl v++EL++TE++YV+dL +l e +l+pL++e +l++de+++l KIAA2016 1117 VIQELVDTEKSYVKDLSCLFELYLEPLQNET------FLTQDEMESL 1157 FgpNieeiyefHrrFLdeLeerveewllskdl.Ksernsviedsgerigd Fg ++e +ef++ FL++Le+ ++ + d++ e+ s++++ +g KIAA2016 1158 FG-SLPEMLEFQKVFLETLEDGISASS---DFnTLETPSQFRKLLFSLGG 1203 vFlklfsaeeffkiYseYcsnhpdalellkkLmkkkknpaFqkflkeies Fl + +++fk+Ys +c+nh + +++l+ +k+++aF++fl+ + KIAA2016 1204 SFLYY---ADHFKLYSGFCANHIKVQKVLER---AKTDKAFKAFLDARNP 1247 kpncrsksearltLeslLikPvQRltkYpLLLkellkhtppdhedredLk ++++ tLes+LikPvQR++kYpLLLkel t+ ++e++ +L+ KIAA2016 1248 TKQHS------STLESYLIKPVQRVLKYPLLLKELVSLTDQESEEHYHLT 1291 kAleaikelasqvNe<-* +Al+a++++as++Ne KIAA2016 1292 EALKAMEKVASHINE 1306 SM00233: domain 2 of 2, from 1340 to 1471: score 17.7, E = 1.7 *->vikeGwLlkks........k.swkkryfvLfngvLlyyksk...... ++++ +++++ + + ++ ++ fv+++ v+l yk+ + +++ KIAA2016 1340 LLMHSTVSWLNpflslgkaRkDLELTVFVFKRAVILVYKENcklkkk 1386 .................kpkgsipLsgcsvre.p........cFeivt.d ++++++ +++++ ++ k + ip+s ++vr + + + ++++ +e+++++ KIAA2016 1387 lpsnsrpahnstdldpfKFRWLIPISALQVRLgNpagtennsIWELIHtK 1436 r........tlllqAeseeereeWvealqsaiaka<-* + ++++++ + l+++++e+++ v+ ++s ++++ KIAA2016 1437 SeiegrpetIFQLCCSDSESKTNIVKVIRSILREN 1471 //