hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-19032408/chunk_1/iprscan-20080502-19032408.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA2009 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00322 73.0 3.6e-17 2 SM00184 29.6 0.00043 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00322 1/2 2 64 .. 1 63 [] 6.2 12 SM00322 2/2 91 158 .. 1 63 [] 66.8 2.7e-15 SM00184 1/1 450 489 .. 1 23 [] 29.6 0.00043 Alignments of top-scoring domains: SM00322: domain 1 of 2, from 2 to 64: score 6.2, E = 12 *->a.vtievipadkvGriIGkgGstIkkieeetgvkIdipg...ertvt a ++ p++ + ++ G Ik+++ +t++ I+ p +++e +++ KIAA2009 2 AcLSLSPTPSSAPWFV----GCKIKALRAKTNTYIKTPVrgeEPVFV 44 ItGppenvekAkelileile<-* +tG +e+v+ A+++i + e KIAA2009 45 VTGRKEDVAMARREIISAAE 64 SM00322: domain 2 of 2, from 91 to 158: score 66.8, E = 2.7e-15 *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg...ertv ++ti+v++p + vG+++G++G+tIk+i+++t + I+ p +++e ++ KIAA2009 91 GqTTIQVrVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSrdkEPVF 137 tItGppenvekAkelileile<-* ++tG penv +A+e+i++ ++ KIAA2009 138 EVTGMPENVDRAREEIEAHIA 158 SM00184: domain 1 of 1, from 450 to 489: score 29.6, E = 0.00043 *->CpICle....pvvlpCgH..FCr.Ci..........CPlC<-* C++C+e++ + + pCgH+ FC +C ++ ++++++CP+C KIAA2009 450 CSVCFEseviAALVPCGHnlFCMeCAnriceksepeCPVC 489 //